Non-Coding RNA Search

Ss1.1-rebs30c_e18.5.5

Sequence:


               
               GGCGTCACTTGGAGCTTGAGCAGCCGCACGAGGCTTTCGGAAGTCTGACAATGGCCAAAA
ACAAACTAAGAGGGCAGAAATCCAGGAATGTATTCCACATAGCCAACCAAAAAAGTTTTA
AGGTTAAAAATAAAGCAAAACCAGTTACCACTAATCTTAAGAAGATAAACATTGTGAATG
AAGAAAAAGTTAACAGACTGAATAAAGCTTTTCTGGATATACAAAAGGAACTTGCACATT
TCTCAAAAGGCCTTTCCCTTGAACCTCTGCAGAAACAGCTGAGTCCTCAGCAGTGTCCTG
AGAAAGAACCAGTTAATGTTGATGAAGCTACAAGATTAATGGCTCAGTTGTAATACACTG
GCGATGCATCAAATTCCCCCAAAAGACCAATAAATTAAATGTTTTATACAATTTTATTTT
AAAAAATCTTGTTAATGTACAGGCATTGGCACATTTTAAAAACAAACTACATAAACAGAT
CTTTCCTATAATCTAGGAAAGTGGAATGTCAGAAGTCAACAAAATGTGATAAACTTAAAG
TGCTAAAACAGAAGGCACTTCACAAAATCTGTTCACTGAAACAGTTAATATCTCCTAGTT
TACACCCTTCACTTTATAAGTGGCAGTGAATGTCTGTTTGTTTGAACTGGAGGAGACGCA
GAATAGGGACAGTCTCGTGGCAGTAAAACTCTAAGACAAATGTGATGAGCCCTTGGGCAA
CATTTTTGTTTTTGATAACCTTAACTTTCCTCTGGTATGAGGGGAAAACAGAAGGATTCA
GAACTGGAAGAAAAGTTGAAACTCCAGAATGTAACTACTTGAGGGAAGGGGGTTAGTGGA
TATGAAGTCACTTTTCCCCTGAAGCAATCAGAGCCCTTTGTTTTTATGAAGTTTTGTGAA
GTATAAAAGAAAGTATTAGGGGAAGAACAGTTCAGAATCAGTGAACTAAAAGTTGTTACA
TTCATTATTTTAAATACTTAGGTTATTAAGAAGTCTAAAATGTTACACAGTTAGAGGTAG
ATAACAGTCCCGAGTTTCCATGGAATCTAATAATTTAGTATCTGGACATCAAACAGATCA
CAAACTCCTTCATTATCATCTAAATTAAAGTTGTAGTCATCCGCTGGGGTCGGAGAAAGC
CGTAAGAGCGGAAACACTGCAAGCAAAAGAGAAATTCAGTGTTAAAAATGGTTTCTACAT
AAAGATAATGATGTCTAACATAAAATAGGATCAAATCAATCCAAATTATGTTTCTCACAT
TATACAGGAATTTTTAAAAAATATACAATAGGATATATATAATGATCAAATTAATGACTT
GTATTTTGTGTATATTTTAAAAAATTCTTGTTTAAAGACATTTCATGCATGGATTATCGG
TGTTTGAGAATTAGAGGTTAAAATTTTTATTGGTTGAACTTGTCACTAAAATTCATGATT
CAGAAACCGGTCAAAGCATTTTCTCTAATCTGCTAAATAAACTATCACTTGGAAAACAGA
AAGGAACTAGACATAGATTAATAAATATGCAGAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGTCACTTGGAGCTTGAGCAGCCGCACGAGGCTTTCGGAAGTCTGACAATGGCCAAAA
ACAAACTAAGAGGGCAGAAATCCAGGAATGTATTCCACATAGCCAACCAAAAAAGTTTTA
AGGTTAAAAATAAAGCAAAACCAGTTACCACTAATCTTAAGAAGATAAACATTGTGAATG
AAGAAAAAGTTAACAGACTGAATAAAGCTTTTCTGGATATACAAAAGGAACTTGCACATT
TCTCAAAAGGCCTTTCCCTTGAACCTCTGCAGAAACAGCTGAGTCCTCAGCAGTGTCCTG
AGAAAGAACCAGTTAATGTTGATGAAGCTACAAGATTAATGGCTCAGTTGTAATACACTG
GCGATGCATCAAATTCCCCCAAAAGACCAATAAATTAAATGTTTTATACAATTTTATTTT
AAAAAATCTTGTTAATGTACAGGCATTGGCACATTTTAAAAACAAACTACATAAACAGAT
CTTTCCTATAATCTAGGAAAGTGGAATGTCAGAAGTCAACAAAATGTGATAAACTTAAAG
TGCTAAAACAGAAGGCACTTCACAAAATCTGTTCACTGAAACAGTTAATATCTCCTAGTT
TACACCCTTCACTTTATAAGTGGCAGTGAATGTCTGTTTGTTTGAACTGGAGGAGACGCA
GAATAGGGACAGTCTCGTGGCAGTAAAACTCTAAGACAAATGTGATGAGCCCTTGGGCAA
CATTTTTGTTTTTGATAACCTTAACTTTCCTCTGGTATGAGGGGAAAACAGAAGGATTCA
GAACTGGAAGAAAAGTTGAAACTCCAGAATGTAACTACTTGAGGGAAGGGGGTTAGTGGA
TATGAAGTCACTTTTCCCCTGAAGCAATCAGAGCCCTTTGTTTTTATGAAGTTTTGTGAA
GTATAAAAGAAAGTATTAGGGGAAGAACAGTTCAGAATCAGTGAACTAAAAGTTGTTACA
TTCATTATTTTAAATACTTAGGTTATTAAGAAGTCTAAAATGTTACACAGTTAGAGGTAG
ATAACAGTCCCGAGTTTCCATGGAATCTAATAATTTAGTATCTGGACATCAAACAGATCA
CAAACTCCTTCATTATCATCTAAATTAAAGTTGTAGTCATCCGCTGGGGTCGGAGAAAGC
CGTAAGAGCGGAAACACTGCAAGCAAAAGAGAAATTCAGTGTTAAAAATGGTTTCTACAT
AAAGATAATGATGTCTAACATAAAATAGGATCAAATCAATCCAAATTATGTTTCTCACAT
TATACAGGAATTTTTAAAAAATATACAATAGGATATATATAATGATCAAATTAATGACTT
GTATTTTGTGTATATTTTAAAAAATTCTTGTTTAAAGACATTTCATGCATGGATTATCGG
TGTTTGAGAATTAGAGGTTAAAATTTTTATTGGTTGAACTTGTCACTAAAATTCATGATT
CAGAAACCGGTCAAAGCATTTTCTCTAATCTGCTAAATAAACTATCACTTGGAAAACAGA
AAGGAACTAGACATAGATTAATAAATATGCAGAAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61834927|ref|XP_587086.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61834927|ref|XP_587086.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-408, gnl|bosTau2|chr11 (37941485-37941078)
               

               
               1-408, gnl|Hg17|chr2 (47870877-47870138)
               

               
               1-408, gnl|Mm7|chr3 (105852958-105853345)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-408, gnl|bosTau2|chr11 (37941485-37941078)
               

               
               1-408, gnl|Hg17|chr2 (47870877-47870138)
               

               
               1-408, gnl|Mm7|chr3 (105852958-105853345)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               sag (0.548145)
               

               
               rec (0.519211)
               

               
               amn (0.417711)
               

               
               sme (0.305437)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.548145)
               

               
               rec (0.519211)
               

               
               amn (0.417711)
               

               
               sme (0.305437)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	1-408, gnl\|bosTau2\|chr11 (37941485-37941078)
	1-408, gnl\|Hg17\|chr2 (47870877-47870138)
	1-408, gnl\|Mm7\|chr3 (105852958-105853345)

	sag (0.548145)
	rec (0.519211)
	amn (0.417711)
	sme (0.305437)
	ebs (0.236602)
	ecc (0.23007)
	nms (0.213858)
	fcc (0.197785)
	aor (0.195274)
	nlu (0.191681)
	gul (0.177588)
	tbr (0.154178)
	isp (0.150376)
	bfe (0.149858)
	fat (0.147427)
	lin (0.145603)
	lnt (0.142308)
	pla (0.133672)
	lyg (0.133103)
	sug (0.127291)
	ese (0.126502)
	tra (0.123092)
	eru (0.120048)
	jca (0.11396)