Non-Coding RNA Search

Ss1.1-rebs30c_h7.5

Sequence:


               
               GCCACATGTCCCTGCAAACTGTGCAGGTAATGAGCGATGAAATAGCAGCCTACTCCTTTT
CAGTGGCCACGCTGTCAGCATTGGCAGACCTGGGTGAGCTCACGGTACCCAGTCCTGTGC
TGGAAACTGTTCCTCATCACCCACCAGATCCGAGTGACGCCGTCTCCGAGAAGTCACGGC
GTTCGTGGTGGCTGTCGTTGGAACGGAACAGTCCTTTATGTGGATATTGTTCAAGTGTTT
AAAGACTATTTTGAAAATTAAGTTTACATTTTACAATCGCTTTATTTTTTATTAAAATAG
TTGTATATAAATATTGCCCTATTTCACTGTTGTTGAAGTAAAAGCTAAATCGTGCAGACC
AGTGAGTCACCTGATGTGTATAGAAGCTGTGACATAGAATACATTTCTCTATTGTGTAAA
TGTTCATGAATATAACTGTTCCTGTGTTTTTATAAGTTGGGGATCATTTGTTGTTTTACA
ACAACATTTATTGCATTTAAACGGTTTTTATGTAATAGACATCATGCAAAATAGTGAAGG
ATTTAAAATATGTATATGATATATGTAAATGTACACACTTTAGAAAGAAATAAATCCAAC
AAATTTCAGTCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACATGTCCCTGCAAACTGTGCAGGTAATGAGCGATGAAATAGCAGCCTACTCCTTTT
CAGTGGCCACGCTGTCAGCATTGGCAGACCTGGGTGAGCTCACGGTACCCAGTCCTGTGC
TGGAAACTGTTCCTCATCACCCACCAGATCCGAGTGACGCCGTCTCCGAGAAGTCACGGC
GTTCGTGGTGGCTGTCGTTGGAACGGAACAGTCCTTTATGTGGATATTGTTCAAGTGTTT
AAAGACTATTTTGAAAATTAAGTTTACATTTTACAATCGCTTTATTTTTTATTAAAATAG
TTGTATATAAATATTGCCCTATTTCACTGTTGTTGAAGTAAAAGCTAAATCGTGCAGACC
AGTGAGTCACCTGATGTGTATAGAAGCTGTGACATAGAATACATTTCTCTATTGTGTAAA
TGTTCATGAATATAACTGTTCCTGTGTTTTTATAAGTTGGGGATCATTTGTTGTTTTACA
ACAACATTTATTGCATTTAAACGGTTTTTATGTAATAGACATCATGCAAAATAGTGAAGG
ATTTAAAATATGTATATGATATATGTAAATGTACACACTTTAGAAAGAAATAAATCCAAC
AAATTTCAGTCAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               119-233, + strand, RNAz p=0.893938
               

               
               431-546, - strand, RNAz p=0.528221

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-233, + strand, RNAz p=0.893938
               

               
               431-546, - strand, RNAz p=0.528221

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC011238, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC011238, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-612, gnl|bosTau2|chr27 (24467572-24468174)
               

               
               1-612, gnl|Hg17|chr8 (18429710-18429093)
               

               
               1-612, gnl|Mm7|chr8 (66144181-66143579)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr27 (24467572-24468174)
               

               
               1-612, gnl|Hg17|chr8 (18429710-18429093)
               

               
               1-612, gnl|Mm7|chr8 (66144181-66143579)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               aor (0.390549)
               

               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               sin (0.174948)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               sin (0.174948)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	119-233, + strand, RNAz p=0.893938
	431-546, - strand, RNAz p=0.528221

	1-612, gnl\|bosTau2\|chr27 (24467572-24468174)
	1-612, gnl\|Hg17\|chr8 (18429710-18429093)
	1-612, gnl\|Mm7\|chr8 (66144181-66143579)

	aor (0.390549)
	fbs (0.350693)
	fco (0.314416)
	cbe (0.239234)
	sin (0.174948)
	csk (0.140746)
	nca (0.136874)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	ebs (0.118301)
	spc (0.113366)