Ss1.1-rebs30c_i20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAATCCAATTAAGGCCTTTTATGAAAGCAGAGCCTACATACCTAATTTATCAGCACCTG CATTTAGTACTTCACTTAACTTTGTGGAGACTGAAAGGAATTCCAGAAAAACTAACCACG AAATGGCAAACGGTGGTAATCAGAATCTAAAGGCGGTAGATGAAGCTTCGAAGGTAGATG ATTGCGACTGTCATCCTGAGTTTCTGCCACCATCAAGTCAGCCTCCAAAATATAAAGGAA AACAAAAATCCAGAAACAATGAATTGGAGAAGTTCAGTTCTGATTCACAAGGGAGTTTAC CAGTAGATTTGAAAAACATCTTGGAGAAACAGTTTTCGAAATCTTCCAGAGCTGCACACC AGGATTTGGCTAATATAATGAAAATGCTGAGAAGCTTAATCCAGGATGGCTACACGGCTT GGTTGGAGCAGCGCTGCCGCAGTGCCGCACAGGCCTTCACAGAATTGCTCAATGGCTTAG ATCCTCAAAAAATAAAGCAATTGAACCTGGCCATGATTAACTACGTCTTGGTAGTCTATG GACTTGCCATTTCACTCCTTGGAATAGGACAGCCTGAGGAATTATCTGAGGCTGAAAACC AGTTCAAGAGGATGATTGAGCACTATCCTAACGAGGGCCTGGACTGCCTGGCCTACTGTG GGATCGGAAAAGTGTACTTGAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAATCCAATTAAGGCCTTTTATGAAAGCAGAGCCTACATACCTAATTTATCAGCACCTG CATTTAGTACTTCACTTAACTTTGTGGAGACTGAAAGGAATTCCAGAAAAACTAACCACG AAATGGCAAACGGTGGTAATCAGAATCTAAAGGCGGTAGATGAAGCTTCGAAGGTAGATG ATTGCGACTGTCATCCTGAGTTTCTGCCACCATCAAGTCAGCCTCCAAAATATAAAGGAA AACAAAAATCCAGAAACAATGAATTGGAGAAGTTCAGTTCTGATTCACAAGGGAGTTTAC CAGTAGATTTGAAAAACATCTTGGAGAAACAGTTTTCGAAATCTTCCAGAGCTGCACACC AGGATTTGGCTAATATAATGAAAATGCTGAGAAGCTTAATCCAGGATGGCTACACGGCTT GGTTGGAGCAGCGCTGCCGCAGTGCCGCACAGGCCTTCACAGAATTGCTCAATGGCTTAG ATCCTCAAAAAATAAAGCAATTGAACCTGGCCATGATTAACTACGTCTTGGTAGTCTATG GACTTGCCATTTCACTCCTTGGAATAGGACAGCCTGAGGAATTATCTGAGGCTGAAAACC AGTTCAAGAGGATGATTGAGCACTATCCTAACGAGGGCCTGGACTGCCTGGCCTACTGTG GGATCGGAAAAGTGTACTTGAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 378-497, - strand, RNAz p=0.691603 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 378-497, - strand, RNAz p=0.691603 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 17-153, gnl|bosTau2|chr1 (99445000-99445138) | |
| 17-153, gnl|canFam2|chr31 (34392263-34392142) | |
| 17-153, gnl|dasNov1|scaffold_6063 (10008-10138) | |
| 17-153, gnl|Hg17|chr21 (37418774-37418913) | |
| 17-153, gnl|hg17|chrX (74748537-74748665) | |
| 17-153, gnl|loxAfr1|scaffold_11658 (71365-71486) | |
| 17-153, gnl|mm7|chr16 (94699816-94699692) | |
| 17-153, gnl|Mm7|chr16 (94699677-94699818) | |
| 17-153, gnl|oryCun1|scaffold_166911 (39873-39993) | |
| 17-153, gnl|panTro1|chrX (77347741-77347869) | |
| 17-153, gnl|rheMac2|chrX (74689669-74689797) | |
| 17-153, gnl|rn3|chr11 (34714116-34713993) | |
| 360-497, gnl|bosTau2|chr1 (99457036-99457173) | |
| 360-497, gnl|canFam2|chr31 (34402492-34402730) | |
| 360-497, gnl|canFam2|chr31 (34402715-34402584) | |
| 360-497, gnl|dasNov1|scaffold_93497 (1129-1367) | |
| 360-497, gnl|dasNov1|scaffold_93497 (1350-1218) | |
| 360-497, gnl|echTel1|scaffold_314853 (155566-155337) | |
| 360-497, gnl|echTel1|scaffold_314853 (155354-155486) | |
| 360-497, gnl|galGal2|chr1 (100751562-100751815) | |
| 360-497, gnl|galGal2|chr1 (100751798-100751674) | |
| 360-497, gnl|hg17|chr21 (37429471-37429700) | |
| 360-497, gnl|Hg17|chr21 (37429546-37429684) | |
| 360-497, gnl|hg17|chrX (74748196-74748328) | |
| 360-497, gnl|loxAfr1|scaffold_63625 (1104-877) | |
| 360-497, gnl|loxAfr1|scaffold_63625 (894-1026) | |
| 360-497, gnl|mm7|chr16 (94707396-94707664) | |
| 360-497, gnl|mm7|chr16 (94707601-94707469) | |
| 360-497, gnl|Mm7|chr16 (94707465-94707602) | |
| 360-497, gnl|monDom2|scaffold_29 (4989103-4988865) | |
| 360-497, gnl|panTro1|chr22 (37461648-37461877) | |
| 360-497, gnl|panTro1|chrX (77347400-77347532) | |
| 360-497, gnl|rheMac2|chr3 (9479653-9479424) | |
| 360-497, gnl|rheMac2|chrX (74689328-74689460) | |
| 572-682, gnl|bosTau2|chr1 (99460069-99460179) | |
| 572-682, gnl|canFam2|chr31 (34405828-34406037) | |
| 572-682, gnl|dasNov1|scaffold_117811 (3039-3248) | |
| 572-682, gnl|echTel1|scaffold_314853 (154181-153972) | |
| 572-682, gnl|galGal2|chr1 (100753433-100753625) | |
| 572-682, gnl|hg17|chr21 (37434659-37434868) | |
| 572-682, gnl|Hg17|chr21 (37434724-37434834) | |
| 572-682, gnl|mm7|chr16 (94709049-94709260) | |
| 572-682, gnl|Mm7|chr16 (94709102-94709212) | |
| 572-682, gnl|monDom2|scaffold_29 (4987168-4986983) | |
| 572-682, gnl|oryCun1|scaffold_166911 (25575-25371) | |
| 572-682, gnl|panTro1|chr22 (37466841-37467050) | |
| 572-682, gnl|rheMac2|chr3 (9474513-9474304) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 17-153, gnl|bosTau2|chr1 (99445000-99445138) | |
| 17-153, gnl|canFam2|chr31 (34392263-34392142) | |
| 17-153, gnl|dasNov1|scaffold_6063 (10008-10138) | |
| 17-153, gnl|Hg17|chr21 (37418774-37418913) | |
| 17-153, gnl|hg17|chrX (74748537-74748665) | |
| 17-153, gnl|loxAfr1|scaffold_11658 (71365-71486) | |
| 17-153, gnl|mm7|chr16 (94699816-94699692) | |
| 17-153, gnl|Mm7|chr16 (94699677-94699818) | |
| 17-153, gnl|oryCun1|scaffold_166911 (39873-39993) | |
| 17-153, gnl|panTro1|chrX (77347741-77347869) | |
| 17-153, gnl|rheMac2|chrX (74689669-74689797) | |
| 17-153, gnl|rn3|chr11 (34714116-34713993) | |
| 360-497, gnl|bosTau2|chr1 (99457036-99457173) | |
| 360-497, gnl|canFam2|chr31 (34402492-34402730) | |
| 360-497, gnl|canFam2|chr31 (34402715-34402584) | |
| 360-497, gnl|dasNov1|scaffold_93497 (1129-1367) | |
| 360-497, gnl|dasNov1|scaffold_93497 (1350-1218) | |
| 360-497, gnl|echTel1|scaffold_314853 (155566-155337) | |
| 360-497, gnl|echTel1|scaffold_314853 (155354-155486) | |
| 360-497, gnl|galGal2|chr1 (100751562-100751815) | |
| 360-497, gnl|galGal2|chr1 (100751798-100751674) | |
| 360-497, gnl|hg17|chr21 (37429471-37429700) | |
| 360-497, gnl|Hg17|chr21 (37429546-37429684) | |
| 360-497, gnl|hg17|chrX (74748196-74748328) | |
| 360-497, gnl|loxAfr1|scaffold_63625 (1104-877) | |
| 360-497, gnl|loxAfr1|scaffold_63625 (894-1026) | |
| 360-497, gnl|mm7|chr16 (94707396-94707664) | |
| 360-497, gnl|mm7|chr16 (94707601-94707469) | |
| 360-497, gnl|Mm7|chr16 (94707465-94707602) | |
| 360-497, gnl|monDom2|scaffold_29 (4989103-4988865) | |
| 360-497, gnl|panTro1|chr22 (37461648-37461877) | |
| 360-497, gnl|panTro1|chrX (77347400-77347532) | |
| 360-497, gnl|rheMac2|chr3 (9479653-9479424) | |
| 360-497, gnl|rheMac2|chrX (74689328-74689460) | |
| 572-682, gnl|bosTau2|chr1 (99460069-99460179) | |
| 572-682, gnl|canFam2|chr31 (34405828-34406037) | |
| 572-682, gnl|dasNov1|scaffold_117811 (3039-3248) | |
| 572-682, gnl|echTel1|scaffold_314853 (154181-153972) | |
| 572-682, gnl|galGal2|chr1 (100753433-100753625) | |
| 572-682, gnl|hg17|chr21 (37434659-37434868) | |
| 572-682, gnl|Hg17|chr21 (37434724-37434834) | |
| 572-682, gnl|mm7|chr16 (94709049-94709260) | |
| 572-682, gnl|Mm7|chr16 (94709102-94709212) | |
| 572-682, gnl|monDom2|scaffold_29 (4987168-4986983) | |
| 572-682, gnl|oryCun1|scaffold_166911 (25575-25371) | |
| 572-682, gnl|panTro1|chr22 (37466841-37467050) | |
| 572-682, gnl|rheMac2|chr3 (9474513-9474304) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.236602) | |
| bfe (0.149858) |