Non-Coding RNA Search

Ss1.1-rebs30c_k3.5

Sequence:


               
               CAGCCTGTTGCCCAATAAACTTAGGAGAGTCCCCCCTCCCCCACGCTGACCCTGGGGTGT
TCCTTCCCTGCCCTCACCTGCCAGCGAGATGAAGAGGAGGTGTGCGACTCGGGGCCAGGG
GTGCCTCCTCTCTGAGCCTCGGTTTTCTTTGCAGAATGGGAGGAGTGGGGGTGTGAGGGG
CAGGGATGAAAGTGGGAGAGGGCAGGACGGGGCTCGGCCTCATGCACGAGGCCCCAGTTC
CTCCATCGGACCCCCGTCCATCCACTCACAGACCCATCCACATGTTATACGGGACTCTAA
GCCACTTCTTCCTCCAGTAGTACATTTATTCAATAAACAGTCATTGACCGGTAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTGTTGCCCAATAAACTTAGGAGAGTCCCCCCTCCCCCACGCTGACCCTGGGGTGT
TCCTTCCCTGCCCTCACCTGCCAGCGAGATGAAGAGGAGGTGTGCGACTCGGGGCCAGGG
GTGCCTCCTCTCTGAGCCTCGGTTTTCTTTGCAGAATGGGAGGAGTGGGGGTGTGAGGGG
CAGGGATGAAAGTGGGAGAGGGCAGGACGGGGCTCGGCCTCATGCACGAGGCCCCAGTTC
CTCCATCGGACCCCCGTCCATCCACTCACAGACCCATCCACATGTTATACGGGACTCTAA
GCCACTTCTTCCTCCAGTAGTACATTTATTCAATAAACAGTCATTGACCGGTAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               184-301, - strand, RNAz p=0.711332

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               184-301, - strand, RNAz p=0.711332

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               200-282, + strand, RNAmicro p=0.998507

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               200-282, + strand, RNAmicro p=0.998507

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-352, gnl|bosTau2|chr18 (38615028-38614678)
               

               
               1-352, gnl|canFam2|chr1 (113113437-113113038)
               

               
               1-352, gnl|dasNov1|scaffold_18750 (13823-13419)
               

               
               1-352, gnl|hg17|chr19 (50498374-50498776)
               

               
               1-352, gnl|Hg17|chr19 (50498426-50498781)
               

               
               1-352, gnl|loxAfr1|scaffold_18143 (27410-27814)
               

               
               1-352, gnl|mm7|chr7 (17107923-17107517)
               

               
               1-352, gnl|Mm7|chr7 (17107875-17107510)
               

               
               1-352, gnl|oryCun1|scaffold_117501 (1465-1121)
               

               
               1-352, gnl|panTro1|chr20_random (22491306-22491709)
               

               
               1-352, gnl|rheMac2|chr19 (51738381-51738785)
               

               
               1-352, gnl|rn3|chr1 (78854864-78854464)
               


               
               31-240, gnl|bosTau2|chr1 (3635553-3635341)
               

               
               31-240, gnl|Hg17|chr19 (50498457-50498667)
               

               
               31-240, gnl|Mm7|chr7 (17107856-17107619)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-352, gnl|bosTau2|chr18 (38615028-38614678)
               

               
               1-352, gnl|canFam2|chr1 (113113437-113113038)
               

               
               1-352, gnl|dasNov1|scaffold_18750 (13823-13419)
               

               
               1-352, gnl|hg17|chr19 (50498374-50498776)
               

               
               1-352, gnl|Hg17|chr19 (50498426-50498781)
               

               
               1-352, gnl|loxAfr1|scaffold_18143 (27410-27814)
               

               
               1-352, gnl|mm7|chr7 (17107923-17107517)
               

               
               1-352, gnl|Mm7|chr7 (17107875-17107510)
               

               
               1-352, gnl|oryCun1|scaffold_117501 (1465-1121)
               

               
               1-352, gnl|panTro1|chr20_random (22491306-22491709)
               

               
               1-352, gnl|rheMac2|chr19 (51738381-51738785)
               

               
               1-352, gnl|rn3|chr1 (78854864-78854464)
               


               
               31-240, gnl|bosTau2|chr1 (3635553-3635341)
               

               
               31-240, gnl|Hg17|chr19 (50498457-50498667)
               

               
               31-240, gnl|Mm7|chr7 (17107856-17107619)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               ebs (0.118301)

	1-352, gnl\|bosTau2\|chr18 (38615028-38614678)
	1-352, gnl\|canFam2\|chr1 (113113437-113113038)
	1-352, gnl\|dasNov1\|scaffold_18750 (13823-13419)
	1-352, gnl\|hg17\|chr19 (50498374-50498776)
	1-352, gnl\|Hg17\|chr19 (50498426-50498781)
	1-352, gnl\|loxAfr1\|scaffold_18143 (27410-27814)
	1-352, gnl\|mm7\|chr7 (17107923-17107517)
	1-352, gnl\|Mm7\|chr7 (17107875-17107510)
	1-352, gnl\|oryCun1\|scaffold_117501 (1465-1121)
	1-352, gnl\|panTro1\|chr20_random (22491306-22491709)
	1-352, gnl\|rheMac2\|chr19 (51738381-51738785)
	1-352, gnl\|rn3\|chr1 (78854864-78854464)

	31-240, gnl\|bosTau2\|chr1 (3635553-3635341)
	31-240, gnl\|Hg17\|chr19 (50498457-50498667)
	31-240, gnl\|Mm7\|chr7 (17107856-17107619)