Non-Coding RNA Search

Ss1.1-rebs30c_m14.5

Sequence:


               
               ATTTATCTAAGCTTTACCCACACAGTTGTCAAAGTGAAAACACTGTGTTAGGTACTGAGA
TGGCTTTGGCGGAACTTTCCGAGTTTTCATCATTTACGTCTTTGGTAGATTAATTTTCTG
CGACCTTTCACTCTTTCCTTTGTGGGAAGAGACTGGTCAGTGTAGGCTTCTGTCCGCTCC
CTCAGTTTCCATCGTGTTGGCTTGGTGCCCTCAGGAAGCAGTTCCTAGAGGATGCTCGTG
ACGTGTGCCTGTTTGGACATATGCTCTGTGGAACTCAGTGCCTGACTTAAAACCCTTGGG
ACCTGGCCTCCGGTGCTTGGCTTCTGAGACATGTCCCAGCATATTCACGAAGACTTAGCT
CCCCCTCGTCCTTGGTAGGAAATCAACCCAAGACTTTTACACCCTTAAACATAAGGAGAA
AGCATCACCTTTGCCTCTTGGTGGCCACCAGGGAGGACAGCCCAGTACAAGTACCAGGAT
GCGATAAGAGGGGACACCCAAATGCCACGGCCGAATCCCCTTTCCCTCCCCCATGCACCA
GACTGAGGGGTGAGCCACACAGTTTCCTTCGGAACTTTCCATTCTCCACGCACAGATATT
CGTAAAGCAGTTTAGGACCCAAAGGCTAGCCTGGCAGCCTGGCGTCTTATGTGGAAAAGC
GAGAGACCAGCGTTTGCCCTGGGAAAAGAGGCAGCTGGAACGGTATCAGGCGATGTGGGC
GTGTGGTCCCTCTTCCAGGGCAGGTGTGGCTTCTGTGACGCCATCCTGCTCTGAGGACAC
TCTGTTGGACGTCCTGGATCAGCAGCAAGGGCACCACCCCGCACATTGTCACCCAAATGC
CTCTAAAAAACAGAAATTATAAGCATGACTCACATTTGTTGAGCACCTACTATGGGCCAG
GCCCTGCTGGGAGCTTTACAAATGCTTATCCTTCTGATAGCCATGTGGGATAAGGTATAT
CACCTTGACGGAGTATATAAAATTCATCTGTTTGGTTTGTTCCTATCCCGTTCCACCCAC
TCGTCCTTCATCCATCCATCCATCCACCCATCCATCCATCCATCTCTTTTCCTCTCTCTC
TCTCTTCACCCAATCTCTGGGACAGGACTATACACGCTTTTAATACAAGAGCTAAGAACT
GCTTAATCCTGCCCTCCGCTCACTTTCAGTAGAAAAAGAGTGGACGCAGACCATGCAGCT
GAGAACTGGTTTGAGTCCAAGATGGCGGTACTCTTGCCCTGTCCTGGGCAGGCGCAGCTG
TGTGTGTTCAGAGGCACACCGCCTGCCTGGCTTTGGAGGGATCCTCGCCTTCCCCGGATT
AACTTCAAAAGGGTAGACAGACATCTCTCCTGTTGTCATGGTGATTCTTCTTCCCAGATA
GGATGTCAGGCATTCTGAGCACGTTTCCCTTGTTGTTTTTCCACCTTCAGCCCAGTCCAG
GCTTGTCCTGGGTGTCCTGTGTTGTTTGCTGAAACAGTAGCTGGTGGAGTGACGCCTCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTATCTAAGCTTTACCCACACAGTTGTCAAAGTGAAAACACTGTGTTAGGTACTGAGA
TGGCTTTGGCGGAACTTTCCGAGTTTTCATCATTTACGTCTTTGGTAGATTAATTTTCTG
CGACCTTTCACTCTTTCCTTTGTGGGAAGAGACTGGTCAGTGTAGGCTTCTGTCCGCTCC
CTCAGTTTCCATCGTGTTGGCTTGGTGCCCTCAGGAAGCAGTTCCTAGAGGATGCTCGTG
ACGTGTGCCTGTTTGGACATATGCTCTGTGGAACTCAGTGCCTGACTTAAAACCCTTGGG
ACCTGGCCTCCGGTGCTTGGCTTCTGAGACATGTCCCAGCATATTCACGAAGACTTAGCT
CCCCCTCGTCCTTGGTAGGAAATCAACCCAAGACTTTTACACCCTTAAACATAAGGAGAA
AGCATCACCTTTGCCTCTTGGTGGCCACCAGGGAGGACAGCCCAGTACAAGTACCAGGAT
GCGATAAGAGGGGACACCCAAATGCCACGGCCGAATCCCCTTTCCCTCCCCCATGCACCA
GACTGAGGGGTGAGCCACACAGTTTCCTTCGGAACTTTCCATTCTCCACGCACAGATATT
CGTAAAGCAGTTTAGGACCCAAAGGCTAGCCTGGCAGCCTGGCGTCTTATGTGGAAAAGC
GAGAGACCAGCGTTTGCCCTGGGAAAAGAGGCAGCTGGAACGGTATCAGGCGATGTGGGC
GTGTGGTCCCTCTTCCAGGGCAGGTGTGGCTTCTGTGACGCCATCCTGCTCTGAGGACAC
TCTGTTGGACGTCCTGGATCAGCAGCAAGGGCACCACCCCGCACATTGTCACCCAAATGC
CTCTAAAAAACAGAAATTATAAGCATGACTCACATTTGTTGAGCACCTACTATGGGCCAG
GCCCTGCTGGGAGCTTTACAAATGCTTATCCTTCTGATAGCCATGTGGGATAAGGTATAT
CACCTTGACGGAGTATATAAAATTCATCTGTTTGGTTTGTTCCTATCCCGTTCCACCCAC
TCGTCCTTCATCCATCCATCCATCCACCCATCCATCCATCCATCTCTTTTCCTCTCTCTC
TCTCTTCACCCAATCTCTGGGACAGGACTATACACGCTTTTAATACAAGAGCTAAGAACT
GCTTAATCCTGCCCTCCGCTCACTTTCAGTAGAAAAAGAGTGGACGCAGACCATGCAGCT
GAGAACTGGTTTGAGTCCAAGATGGCGGTACTCTTGCCCTGTCCTGGGCAGGCGCAGCTG
TGTGTGTTCAGAGGCACACCGCCTGCCTGGCTTTGGAGGGATCCTCGCCTTCCCCGGATT
AACTTCAAAAGGGTAGACAGACATCTCTCCTGTTGTCATGGTGATTCTTCTTCCCAGATA
GGATGTCAGGCATTCTGAGCACGTTTCCCTTGTTGTTTTTCCACCTTCAGCCCAGTCCAG
GCTTGTCCTGGGTGTCCTGTGTTGTTTGCTGAAACAGTAGCTGGTGGAGTGACGCCTCGC

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               12-450, gnl|bosTau2|chr12 (18742682-18743128)
               

               
               12-450, gnl|Hg17|chr13 (24638216-24637786)
               


               
               453-675, gnl|bosTau2|chr12 (18743560-18743786)
               

               
               453-675, gnl|Hg17|chr13 (24637773-24637523)
               

               
               453-675, gnl|Mm7|chr14 (55251554-55251780)
               


               
               1039-1496, gnl|bosTau2|chr12 (18744749-18745209)
               

               
               1039-1496, gnl|Hg17|chr13 (24636758-24635263)
               

               
               1039-1496, gnl|Mm7|chr14 (55252413-55252834)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-450, gnl|bosTau2|chr12 (18742682-18743128)
               

               
               12-450, gnl|Hg17|chr13 (24638216-24637786)
               


               
               453-675, gnl|bosTau2|chr12 (18743560-18743786)
               

               
               453-675, gnl|Hg17|chr13 (24637773-24637523)
               

               
               453-675, gnl|Mm7|chr14 (55251554-55251780)
               


               
               1039-1496, gnl|bosTau2|chr12 (18744749-18745209)
               

               
               1039-1496, gnl|Hg17|chr13 (24636758-24635263)
               

               
               1039-1496, gnl|Mm7|chr14 (55252413-55252834)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ecc (0.345105)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.345105)
               

               
               ebs (0.118301)

	12-450, gnl\|bosTau2\|chr12 (18742682-18743128)
	12-450, gnl\|Hg17\|chr13 (24638216-24637786)

	453-675, gnl\|bosTau2\|chr12 (18743560-18743786)
	453-675, gnl\|Hg17\|chr13 (24637773-24637523)
	453-675, gnl\|Mm7\|chr14 (55251554-55251780)

	1039-1496, gnl\|bosTau2\|chr12 (18744749-18745209)
	1039-1496, gnl\|Hg17\|chr13 (24636758-24635263)
	1039-1496, gnl\|Mm7\|chr14 (55252413-55252834)