Non-Coding RNA Search

Ss1.1-rebs31c_e15.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCAGCACACACAC
CATTTAAGCTTCCAAACATGATGAGGGTTCAGGATGTACAAAATTGTCCTCAGGAAGTGA
CAAGGATGATATAGTTGGGGCCGGAAGGAGTTCGCGAGGGGCAGGCTGGCTCTTCCTGGG
GTGGGGGATGGGGGGGCGCTTCTTGGCTGATGCCCATCTCTTCTCTCCCCAACAGAGGCC
AGGCCCTGAGCTCTTCGACCCCAGCAGCTGTCCTGGGGAATGGCTAAGTGAGCCAGACTG
GACCCTGGATGGCATCCGGGGGCCACGGGCTCAGGGGCTCCCACCACGCCACACCCACCC
TCATGGTCCACCCAGGGCCACCAGTTTTCTGCAGCACGTCGGTGGGCACCACTGATGGTG
ACCCCAACCCCTGCCCATCCCTGGGGGCTGCTGGAGTGGGGCTGGCATCCCCCACTCAGA
GCCATCCCCTGACCTGACAAATTATTCTTACAGAAAGATAGTTATCCAGAAATTCCCCAT
TTCCCCCACCCGTAGAGAAGGGCACACACACTCCCCGAACACAGGAGGGCTTTGGGGTCT
AGCCCATGTCCCCCTCGGCCAGAGGGATGCAGGAAGGGGGCTGTACCCCACTGGCCCTGA
GCACGCCCTTGGCCCTGCTGCCTCTGTTTATTTCAATAAAGAACTTTTCAGCAGTACTGC
CTCATGCTTGTTCTCCCTGCCTGAGGCCCGGACTGGCCCTGGTGGGGGGATGTCGGGAGG
GGGTGCTCCACTGCTGTCCCTAGCCTGCCACTGGCTCAGGCTGGAGGCTGTGCTTGGCAT
GCTGACCCATCCCCTAAATATGCTCCGTGCTTGGCAAGCAAGAATCCACCCTCAGAACAT
TCTCAGTGTTCAGCAGGTGCCCATCTGAACTTGCCAACTGCCAAGTTCATCATCTGCTGA
CCTGTCCTGGCCACAGGTTTACAGGCTTGGCATGCACTCATCCATGCTCCGGACATGCGA
AGTGTAAGTTCACATGGCAGGTGTAAATTCACGCTTGGTGCATGCTCCAGTGCCCAGACG
TGCAAATCCAGCCCTGGGATATGGCAGGGGCTTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCAGCACACACAC
CATTTAAGCTTCCAAACATGATGAGGGTTCAGGATGTACAAAATTGTCCTCAGGAAGTGA
CAAGGATGATATAGTTGGGGCCGGAAGGAGTTCGCGAGGGGCAGGCTGGCTCTTCCTGGG
GTGGGGGATGGGGGGGCGCTTCTTGGCTGATGCCCATCTCTTCTCTCCCCAACAGAGGCC
AGGCCCTGAGCTCTTCGACCCCAGCAGCTGTCCTGGGGAATGGCTAAGTGAGCCAGACTG
GACCCTGGATGGCATCCGGGGGCCACGGGCTCAGGGGCTCCCACCACGCCACACCCACCC
TCATGGTCCACCCAGGGCCACCAGTTTTCTGCAGCACGTCGGTGGGCACCACTGATGGTG
ACCCCAACCCCTGCCCATCCCTGGGGGCTGCTGGAGTGGGGCTGGCATCCCCCACTCAGA
GCCATCCCCTGACCTGACAAATTATTCTTACAGAAAGATAGTTATCCAGAAATTCCCCAT
TTCCCCCACCCGTAGAGAAGGGCACACACACTCCCCGAACACAGGAGGGCTTTGGGGTCT
AGCCCATGTCCCCCTCGGCCAGAGGGATGCAGGAAGGGGGCTGTACCCCACTGGCCCTGA
GCACGCCCTTGGCCCTGCTGCCTCTGTTTATTTCAATAAAGAACTTTTCAGCAGTACTGC
CTCATGCTTGTTCTCCCTGCCTGAGGCCCGGACTGGCCCTGGTGGGGGGATGTCGGGAGG
GGGTGCTCCACTGCTGTCCCTAGCCTGCCACTGGCTCAGGCTGGAGGCTGTGCTTGGCAT
GCTGACCCATCCCCTAAATATGCTCCGTGCTTGGCAAGCAAGAATCCACCCTCAGAACAT
TCTCAGTGTTCAGCAGGTGCCCATCTGAACTTGCCAACTGCCAAGTTCATCATCTGCTGA
CCTGTCCTGGCCACAGGTTTACAGGCTTGGCATGCACTCATCCATGCTCCGGACATGCGA
AGTGTAAGTTCACATGGCAGGTGTAAATTCACGCTTGGTGCATGCTCCAGTGCCCAGACG
TGCAAATCCAGCCCTGGGATATGGCAGGGGCTTGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               520-669, - strand, RNAz p=0.9555

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               520-669, - strand, RNAz p=0.9555

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               563-658, - strand, RNAmicro p=0.937733

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               563-658, - strand, RNAmicro p=0.937733

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               46-913, gnl|bosTau2|chr18 (41437577-41436686)
               

               
               46-913, gnl|Hg17|chr19 (45577692-45576773)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-913, gnl|bosTau2|chr18 (41437577-41436686)
               

               
               46-913, gnl|Hg17|chr19 (45577692-45576773)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               elu (0.385356)
               

               
               ebs (0.354904)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ebs (0.354904)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	46-913, gnl\|bosTau2\|chr18 (41437577-41436686)
	46-913, gnl\|Hg17\|chr19 (45577692-45576773)

	elu (0.385356)
	ebs (0.354904)
	fhi (0.339155)
	hyp (0.285673)
	fce (0.271592)
	ece (0.229305)
	mas (0.210305)
	fcc (0.197785)
	fbs (0.175346)
	nje (0.16592)
	csp (0.161186)
	cly (0.120642)
	med (0.116252)