Ss1.1-rebs31c_m13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCACTTCCTGTTGCATTCGCTGGAGAACGTAGAAGATGTGCTTTATTTCTGGAAGCATT CCACGGTCCTGGACATTGGTGAGTGCCTGACAGTCCCAGATGAGTTCTCAGAGCAAGAGA AGCTGACTGGCATGTGGTGGAAGCAGCTGGTGGCAGGTGCAGTGGCAGGTGCCGTGTCCC GGACAGGCACCGCCCCTCTGGACCGCCTCAAGGTCTTCATGCAGGTCCATGCCTCTAAGA CCAACCGGCTGAACATCCTGGGGGGCCTACGGAGCATGATCCAAGAGGGGGGCGTCCGCT CCCTGTGGCGTGGCAACGGGATTAACGTGCTCAAGATTGCACCTGAGTCGGCTATCAAGT TCATGGCCTATGAGCAGATCAAGCGGGCCATCCGGGGACAGCAGGAAACATTACACGTGC AGGAACGCTTCGTGGCTGGCTCACTGGCTGGTGCCACAGCTCAAACCATCATTTACCCCA TGGAGGTGCTGAAGACACGGCTGACCCTTCGCCGGACAGGCCAGTACAAGGGGCTGCTAG ACTGCGCTTGGCGGATCCTGGAGCGAGAAGGGCCCCGAGCCTTCTACCGAGGCTACCTAC CCAACGTGCTGGGCATCATACCCTACGCAGGGATTGACCTGGCCGTCTACGAGACCCTGA AGAACCAATGGCTCCAGCAGTATAGCCACGACTCAGCCGATCCTGGCATCCTCGTGCTCC TGGCCTGCGGCACCATCTCCAGCACGTGTGGCCAGTTAGCCAGTTACCCCCTGGCCCTGG TGCGGACCCGCATGCAGGCCCAAGGTGAGGCCGGGGCAGTGGGAGGAGAAAGGGAAGGTC TCAGGTGGTCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCACTTCCTGTTGCATTCGCTGGAGAACGTAGAAGATGTGCTTTATTTCTGGAAGCATT CCACGGTCCTGGACATTGGTGAGTGCCTGACAGTCCCAGATGAGTTCTCAGAGCAAGAGA AGCTGACTGGCATGTGGTGGAAGCAGCTGGTGGCAGGTGCAGTGGCAGGTGCCGTGTCCC GGACAGGCACCGCCCCTCTGGACCGCCTCAAGGTCTTCATGCAGGTCCATGCCTCTAAGA CCAACCGGCTGAACATCCTGGGGGGCCTACGGAGCATGATCCAAGAGGGGGGCGTCCGCT CCCTGTGGCGTGGCAACGGGATTAACGTGCTCAAGATTGCACCTGAGTCGGCTATCAAGT TCATGGCCTATGAGCAGATCAAGCGGGCCATCCGGGGACAGCAGGAAACATTACACGTGC AGGAACGCTTCGTGGCTGGCTCACTGGCTGGTGCCACAGCTCAAACCATCATTTACCCCA TGGAGGTGCTGAAGACACGGCTGACCCTTCGCCGGACAGGCCAGTACAAGGGGCTGCTAG ACTGCGCTTGGCGGATCCTGGAGCGAGAAGGGCCCCGAGCCTTCTACCGAGGCTACCTAC CCAACGTGCTGGGCATCATACCCTACGCAGGGATTGACCTGGCCGTCTACGAGACCCTGA AGAACCAATGGCTCCAGCAGTATAGCCACGACTCAGCCGATCCTGGCATCCTCGTGCTCC TGGCCTGCGGCACCATCTCCAGCACGTGTGGCCAGTTAGCCAGTTACCCCCTGGCCCTGG TGCGGACCCGCATGCAGGCCCAAGGTGAGGCCGGGGCAGTGGGAGGAGAAAGGGAAGGTC TCAGGTGGTCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 520-639, + strand, RNAz p=0.938864 | |
| 536-651, + strand, RNAz p=0.805996 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 520-639, + strand, RNAz p=0.938864 | |
| 536-651, + strand, RNAz p=0.805996 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-654, gnl|bosTau2|chr7 (52316736-52317379) | |
| 1-654, gnl|Hg17|chr19 (6407495-6403323) | |
| 1-654, gnl|Mm7|chr17 (55266491-55263835) | |
| 40-226, gnl|bosTau2|chr11 (77599859-77600048) | |
| 40-226, gnl|Hg17|chr9 (127945487-127945674) | |
| 40-226, gnl|Mm7|chr2 (32426546-32426357) | |
| 481-653, gnl|bosTau2|chr11 (77601974-77602146) | |
| 481-653, gnl|canFam2|chr9 (58705533-58705330) | |
| 481-653, gnl|danRer3|chr5 (25219199-25219388) | |
| 481-653, gnl|dasNov1|scaffold_117326 (5778-5589) | |
| 481-653, gnl|echTel1|scaffold_275143 (14945-14752) | |
| 481-653, gnl|fr1|chrUn (244164346-244164521) | |
| 481-653, gnl|galGal2|chr17 (5928365-5928627) | |
| 481-653, gnl|hg17|chr9 (127948163-127948363) | |
| 481-653, gnl|Hg17|chr9 (127948181-127948353) | |
| 481-653, gnl|loxAfr1|scaffold_8335 (83766-83562) | |
| 481-653, gnl|mm7|chr2 (32424590-32424395) | |
| 481-653, gnl|Mm7|chr2 (32424575-32424403) | |
| 481-653, gnl|monDom2|scaffold_51 (2605988-2606183) | |
| 481-653, gnl|oryCun1|scaffold_194634 (7521-7348) | |
| 481-653, gnl|panTro1|chr11_random (6072389-6072189) | |
| 481-653, gnl|rheMac2|chr15 (98457621-98457399) | |
| 481-653, gnl|rn3|chr3 (11438549-11438351) | |
| 481-653, gnl|tetNig1|chr12 (10008235-10008420) | |
| 481-653, gnl|xenTro1|scaffold_82 (1647858-1648050) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-654, gnl|bosTau2|chr7 (52316736-52317379) | |
| 1-654, gnl|Hg17|chr19 (6407495-6403323) | |
| 1-654, gnl|Mm7|chr17 (55266491-55263835) | |
| 40-226, gnl|bosTau2|chr11 (77599859-77600048) | |
| 40-226, gnl|Hg17|chr9 (127945487-127945674) | |
| 40-226, gnl|Mm7|chr2 (32426546-32426357) | |
| 481-653, gnl|bosTau2|chr11 (77601974-77602146) | |
| 481-653, gnl|canFam2|chr9 (58705533-58705330) | |
| 481-653, gnl|danRer3|chr5 (25219199-25219388) | |
| 481-653, gnl|dasNov1|scaffold_117326 (5778-5589) | |
| 481-653, gnl|echTel1|scaffold_275143 (14945-14752) | |
| 481-653, gnl|fr1|chrUn (244164346-244164521) | |
| 481-653, gnl|galGal2|chr17 (5928365-5928627) | |
| 481-653, gnl|hg17|chr9 (127948163-127948363) | |
| 481-653, gnl|Hg17|chr9 (127948181-127948353) | |
| 481-653, gnl|loxAfr1|scaffold_8335 (83766-83562) | |
| 481-653, gnl|mm7|chr2 (32424590-32424395) | |
| 481-653, gnl|Mm7|chr2 (32424575-32424403) | |
| 481-653, gnl|monDom2|scaffold_51 (2605988-2606183) | |
| 481-653, gnl|oryCun1|scaffold_194634 (7521-7348) | |
| 481-653, gnl|panTro1|chr11_random (6072389-6072189) | |
| 481-653, gnl|rheMac2|chr15 (98457621-98457399) | |
| 481-653, gnl|rn3|chr3 (11438549-11438351) | |
| 481-653, gnl|tetNig1|chr12 (10008235-10008420) | |
| 481-653, gnl|xenTro1|scaffold_82 (1647858-1648050) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| pla (0.133672) | |
| ebs (0.118301) |