Non-Coding RNA Search

Ss1.1-rebs31c_m7.5

Sequence:


               
               ACAGCAAGCTGGGGGTTCTATGATGGATGGTCCAGGCCCCCGAATTCCTGATCACCCAAG
AGCGTCTGTGCCAGAAAACCATGCGCAGTCTAGGATTGCGCTTGCCCTGACAGCCATCAG
TCTTGGCACTGCTCGGCCGCCTCCGTCCATGTCTGCGGCTGGTCTTGCTGCAAGAATGTC
CCAGGTTCCAGCTCCAGTGCCTCTCATGAGTCTCAGAACAGCTCCAGCTGCCAACCTTGC
CAGCAGGATCCCTGCAGCCTCTGCAGCAGCCATGAACCTGGCCAGCGCCAGGACACCTGC
CATCCCAACAGCAGTGAACCTGGCCGACTCAAGAACCCCAGCTGCAGCAGCAGCCATGAA
CTTGGCCAGCCCCAGAACAGCCGTAGCACCTTCGGCCGTGAACCTGGCTGACCCTCGTAC
CCCCACAGCCTCAGCCGTGAACCTAGCAGGAGCCAGAACCCCAGCTGCTTTGGCAGCTTT
GAGTCTCGCGGGCTCTGGCACACCCCCGACTACTGCAAACTATCCCTCCAGCTCCAGAAC
GCCCCAGGCTCCAGCCCCTGCAAACCTGGTGGGTCCTAGATCTGCACATGCCGCAGCCGT
GAATATTGCCAGCTCAAGAACGCCTCCAGCCTTAGCCCCTGCAAACCTCACTAGTGCTAG
AATGGCTCCAGCCTTGTCTGGTGCAAACCTCACCACCCCTCGAGTGCCCCTGTCTGCCTA
TGAGCGTGTTAGTGGCCGAGCCTCACCACCACTCCTTGACAGGGCCAGGTCCAGAACCCC
ACCATCAGCACCGAGCCAGTCTAGAATGACATCTGAGCGGGCTCCGTCTCCTGCCTCTAG
AATGATCCAGGCTCCCTCACAGCCTGTTCTTTCTCTAGCTCAGGATCGGCCTAGGTCCCC
CGTGCCATCGGCTTTTTCTGACCAGTCCCGATCTTTGCTTGCCCAGACCACCCCTATGAC
GGGGGCTCAGTCGCTTTCCTCTGGGACTGTGGCAAAGACCACGCCCTCTGCGGGTGACCA
CAATGGCATGCTCTCTGGCTCTGTCTCCGGGGCACCCCACCCGGAGGGTGGGGAACCAGC
TGCCTCGTCGGGGGCCCAGCAGCCTTCCGCGTTGGCTGCCCTGCAGCCAGCAAAGGAGCG
GCGGAGTTCGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCAAGCTGGGGGTTCTATGATGGATGGTCCAGGCCCCCGAATTCCTGATCACCCAAG
AGCGTCTGTGCCAGAAAACCATGCGCAGTCTAGGATTGCGCTTGCCCTGACAGCCATCAG
TCTTGGCACTGCTCGGCCGCCTCCGTCCATGTCTGCGGCTGGTCTTGCTGCAAGAATGTC
CCAGGTTCCAGCTCCAGTGCCTCTCATGAGTCTCAGAACAGCTCCAGCTGCCAACCTTGC
CAGCAGGATCCCTGCAGCCTCTGCAGCAGCCATGAACCTGGCCAGCGCCAGGACACCTGC
CATCCCAACAGCAGTGAACCTGGCCGACTCAAGAACCCCAGCTGCAGCAGCAGCCATGAA
CTTGGCCAGCCCCAGAACAGCCGTAGCACCTTCGGCCGTGAACCTGGCTGACCCTCGTAC
CCCCACAGCCTCAGCCGTGAACCTAGCAGGAGCCAGAACCCCAGCTGCTTTGGCAGCTTT
GAGTCTCGCGGGCTCTGGCACACCCCCGACTACTGCAAACTATCCCTCCAGCTCCAGAAC
GCCCCAGGCTCCAGCCCCTGCAAACCTGGTGGGTCCTAGATCTGCACATGCCGCAGCCGT
GAATATTGCCAGCTCAAGAACGCCTCCAGCCTTAGCCCCTGCAAACCTCACTAGTGCTAG
AATGGCTCCAGCCTTGTCTGGTGCAAACCTCACCACCCCTCGAGTGCCCCTGTCTGCCTA
TGAGCGTGTTAGTGGCCGAGCCTCACCACCACTCCTTGACAGGGCCAGGTCCAGAACCCC
ACCATCAGCACCGAGCCAGTCTAGAATGACATCTGAGCGGGCTCCGTCTCCTGCCTCTAG
AATGATCCAGGCTCCCTCACAGCCTGTTCTTTCTCTAGCTCAGGATCGGCCTAGGTCCCC
CGTGCCATCGGCTTTTTCTGACCAGTCCCGATCTTTGCTTGCCCAGACCACCCCTATGAC
GGGGGCTCAGTCGCTTTCCTCTGGGACTGTGGCAAAGACCACGCCCTCTGCGGGTGACCA
CAATGGCATGCTCTCTGGCTCTGTCTCCGGGGCACCCCACCCGGAGGGTGGGGAACCAGC
TGCCTCGTCGGGGGCCCAGCAGCCTTCCGCGTTGGCTGCCCTGCAGCCAGCAAAGGAGCG
GCGGAGTTCGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20380014|gb|AAH27781.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20380014|gb|AAH27781.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               201-400, - strand, RNAz p=0.978119

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-400, - strand, RNAz p=0.978119

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-429, gnl|bosTau2|chr25 (3720792-3720365)
               

               
               2-429, gnl|Hg17|chr16 (2756978-2757405)
               

               
               2-429, gnl|Mm7|chr17 (22000274-22000701)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-429, gnl|bosTau2|chr25 (3720792-3720365)
               

               
               2-429, gnl|Hg17|chr16 (2756978-2757405)
               

               
               2-429, gnl|Mm7|chr17 (22000274-22000701)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.245128)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               ebs (0.118301)

	2-429, gnl\|bosTau2\|chr25 (3720792-3720365)
	2-429, gnl\|Hg17\|chr16 (2756978-2757405)
	2-429, gnl\|Mm7\|chr17 (22000274-22000701)