Non-Coding RNA Search

Ss1.1-rebs32c_a16.5

Sequence:


               
               CTGACAGTGACAGCCCCAGCACACAGCACCTAGCTCACGAGCTGAAGTTCTTTCCAGGGG
ATGATGGCCTGGAAGCAGTTAGTTCTCCAAGAACATCAGATTCCCTCAGTAGATCTAAAA
ACAGCCCCATGGAATTCTTTAGGGATAGACAGTAAGGATAGTACGAGTGAGCTCCTAGGA
CTTGATTTTGGAGAAAAATTGTATAGTCTAAAGTCAGAACCTTTGAAACCGTTCTTCACG
CTTTCAGATGGAGACAGCACTTCCAGGAGTTTTAGTTCTAGTGAAAGCAAAGTGGAGTTT
ATAGCTCAGGACACCATTAGCAGGGGCTCAGATGACTCGGTCCCTGTCATTTCTTTTAAA
GATGCTGCTTTGGATGATGTCACTGGTCCTGATGAAGGCAGGCCTGATCTCCTTGTAAAT
TTACCTGGTGAATTGGAGCCTCTGAAAGATGGTGCAGCAGTGGGACCCACTAAGTTCACA
CAGACTAATGTAGGCAAAGTAGAAAGTAAACTATTGGAAACCCCTGATGTTTTATGCCTC
AGGCTTAGTACTGAACAGTACCAAGCACATGAAGAAAAAGGCACAGAGGAATTGCATGAC
CCTTGCAGGCCTAAATCCCACAGCATAGCAGAGAAACACTATGCACAGGGGGATCTTGGG
ATGTTATTTGTTGATCATAGTAATACAGGAGACGTGCCTTTGTTACACAGTTCAGATCCT
AAGTTTCAAGGACTTGGCCTGGTTGAGTCGGCAGTAACGGCAGACAACACCGAAGGAAGC
TTATCCCATATTTCTAACCCACTCTCAGGTGCTAATGAATATAATGTAAACAAAGACACT
TTAAAAACTGAAGAAGTATTGCTGTTTACAGATCAAGCTGATGATTTGGCTAAAGAAGAA
CCAGATATATTTCAGAGAGACTCCGAGACGAAGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACAGTGACAGCCCCAGCACACAGCACCTAGCTCACGAGCTGAAGTTCTTTCCAGGGG
ATGATGGCCTGGAAGCAGTTAGTTCTCCAAGAACATCAGATTCCCTCAGTAGATCTAAAA
ACAGCCCCATGGAATTCTTTAGGGATAGACAGTAAGGATAGTACGAGTGAGCTCCTAGGA
CTTGATTTTGGAGAAAAATTGTATAGTCTAAAGTCAGAACCTTTGAAACCGTTCTTCACG
CTTTCAGATGGAGACAGCACTTCCAGGAGTTTTAGTTCTAGTGAAAGCAAAGTGGAGTTT
ATAGCTCAGGACACCATTAGCAGGGGCTCAGATGACTCGGTCCCTGTCATTTCTTTTAAA
GATGCTGCTTTGGATGATGTCACTGGTCCTGATGAAGGCAGGCCTGATCTCCTTGTAAAT
TTACCTGGTGAATTGGAGCCTCTGAAAGATGGTGCAGCAGTGGGACCCACTAAGTTCACA
CAGACTAATGTAGGCAAAGTAGAAAGTAAACTATTGGAAACCCCTGATGTTTTATGCCTC
AGGCTTAGTACTGAACAGTACCAAGCACATGAAGAAAAAGGCACAGAGGAATTGCATGAC
CCTTGCAGGCCTAAATCCCACAGCATAGCAGAGAAACACTATGCACAGGGGGATCTTGGG
ATGTTATTTGTTGATCATAGTAATACAGGAGACGTGCCTTTGTTACACAGTTCAGATCCT
AAGTTTCAAGGACTTGGCCTGGTTGAGTCGGCAGTAACGGCAGACAACACCGAAGGAAGC
TTATCCCATATTTCTAACCCACTCTCAGGTGCTAATGAATATAATGTAAACAAAGACACT
TTAAAAACTGAAGAAGTATTGCTGTTTACAGATCAAGCTGATGATTTGGCTAAAGAAGAA
CCAGATATATTTCAGAGAGACTCCGAGACGAAGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6466791|gb|AAF13027.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6466791|gb|AAF13027.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               529-679, - strand, RNAz p=0.996777

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               529-679, - strand, RNAz p=0.996777

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-933, gnl|bosTau2|chr16 (52438131-52437215)
               

               
               23-933, gnl|Hg17|chr1 (209802890-209803821)
               

               
               23-933, gnl|Mm7|chr1 (190353640-190352733)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-933, gnl|bosTau2|chr16 (52438131-52437215)
               

               
               23-933, gnl|Hg17|chr1 (209802890-209803821)
               

               
               23-933, gnl|Mm7|chr1 (190353640-190352733)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.136874)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               ebs (0.118301)

	23-933, gnl\|bosTau2\|chr16 (52438131-52437215)
	23-933, gnl\|Hg17\|chr1 (209802890-209803821)
	23-933, gnl\|Mm7\|chr1 (190353640-190352733)