Non-Coding RNA Search

Ss1.1-rebs32c_f2.5

Sequence:


               
               TATTGATTCAGACTTTCTCTCGAAAGTTGAACATAAATGCAAGATTTTGGGAATTAATAC
TGAGAGGCCCATTCTGCAGGTGGATGGCTATGTCTTTGCTGGGGAATATGAAGACACCCT
TGGGACCTGTGTTATATTTGAAGAAAATGTTGAACATGATGCAGAAGGCAATAATAAAAC
AGTGCTAAAATATAAATGCCACACAATGAAGAAGCTCAGCATGACAAGAACTCTTCTGAC
AGAAAAGAAGGAAGGAGAAGAACACAAAGGTGGTGTGGAGTGGCTACAAATCAAGGAGAA
TGTTTACTCGTGTAGACCCAACATGATTTGTAATTTTCTGCATGATAATGAAGATGAGGA
AGTTGTAGCTCCAGACCCAGATAAACCTTTGGAGTTGGAAGAACAAGAGATTCAAATGAA
AGATAATTCAAACCTGAGTTATGAACACGGGGACCCACCGAACTTGGAAATAGAGGATTC
TGGTGCTCTTACTGATATACCCTCTGAGACAGAAGGCTCTGTTTTTATGGAAACTCAAGA
TACAGCCTTAGAAATGACTCCTAGGTGAAATGTTTCTCATAATAACTAGTCGTGAACTTT
TTAGGGGTTTTATATAATAGGCTTTGTAGCTTTCAGCTGTTCACAATTTTATTATTTCTG
TTGGCAATACACACATTTCCAATTATAGCATAGTTTAATCTATTAGAATTTAGGGACCAG
ATATGAATTTTTAAAAAAATACGGTGTAAATGATTATAGGGACCCTTCTGTGATGAGTCC
TTTAAATTGGAGGTTTAACTAAGGTGAGTGTGTAAGTTTCTGTTGAAACCATCACAAATT
ACCACAGACTTAGTGGCTTAAAACTACGTAAGTGTATTGTCTTATAGTTTTGCAGGTCAG
CTGTCTAACATGGGTTTCACCTGTCTCAGCTTGATGGGCTAAAGTCAAGGTATTTGCAGG
ATTTCCTTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTGATTCAGACTTTCTCTCGAAAGTTGAACATAAATGCAAGATTTTGGGAATTAATAC
TGAGAGGCCCATTCTGCAGGTGGATGGCTATGTCTTTGCTGGGGAATATGAAGACACCCT
TGGGACCTGTGTTATATTTGAAGAAAATGTTGAACATGATGCAGAAGGCAATAATAAAAC
AGTGCTAAAATATAAATGCCACACAATGAAGAAGCTCAGCATGACAAGAACTCTTCTGAC
AGAAAAGAAGGAAGGAGAAGAACACAAAGGTGGTGTGGAGTGGCTACAAATCAAGGAGAA
TGTTTACTCGTGTAGACCCAACATGATTTGTAATTTTCTGCATGATAATGAAGATGAGGA
AGTTGTAGCTCCAGACCCAGATAAACCTTTGGAGTTGGAAGAACAAGAGATTCAAATGAA
AGATAATTCAAACCTGAGTTATGAACACGGGGACCCACCGAACTTGGAAATAGAGGATTC
TGGTGCTCTTACTGATATACCCTCTGAGACAGAAGGCTCTGTTTTTATGGAAACTCAAGA
TACAGCCTTAGAAATGACTCCTAGGTGAAATGTTTCTCATAATAACTAGTCGTGAACTTT
TTAGGGGTTTTATATAATAGGCTTTGTAGCTTTCAGCTGTTCACAATTTTATTATTTCTG
TTGGCAATACACACATTTCCAATTATAGCATAGTTTAATCTATTAGAATTTAGGGACCAG
ATATGAATTTTTAAAAAAATACGGTGTAAATGATTATAGGGACCCTTCTGTGATGAGTCC
TTTAAATTGGAGGTTTAACTAAGGTGAGTGTGTAAGTTTCTGTTGAAACCATCACAAATT
ACCACAGACTTAGTGGCTTAAAACTACGTAAGTGTATTGTCTTATAGTTTTGCAGGTCAG
CTGTCTAACATGGGTTTCACCTGTCTCAGCTTGATGGGCTAAAGTCAAGGTATTTGCAGG
ATTTCCTTTTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19923927|ref|NP_612417.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19923927|ref|NP_612417.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               268-386, - strand, RNAz p=0.711633
               

               
               467-583, - strand, RNAz p=0.530873

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-386, - strand, RNAz p=0.711633
               

               
               467-583, - strand, RNAz p=0.530873

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               268-923, gnl|bosTau2|chr9 (20596957-20596299)
               

               
               268-923, gnl|Hg17|chr6 (111395404-111396668)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               268-923, gnl|bosTau2|chr9 (20596957-20596299)
               

               
               268-923, gnl|Hg17|chr6 (111395404-111396668)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	268-386, - strand, RNAz p=0.711633
	467-583, - strand, RNAz p=0.530873

	268-923, gnl\|bosTau2\|chr9 (20596957-20596299)
	268-923, gnl\|Hg17\|chr6 (111395404-111396668)

	tes (0.207814)
	fbs (0.175346)
	fat (0.147427)
	spl (0.143184)
	ebs (0.118301)
	ldo (0.0970026)