Ss1.1-rebs32c_l8.5
|
GCACCAGTCCCGCGCCCCGCGCTCTCCGGCCCGCCGCCTTGCGTTCTGGCTCGCCAGCCC
GCACTCCCGCCCTGCCCGTGCGCTGCCCGAGTATGGAGCTGCTGTGCTGCGAGGGCACCC
GGCACGCGCCCCGGGCCGGGCCGGCCTGAGCCTGGATATTTGGGGAAGGGGTCCTGCAAA
GCCTGCTCCGCCTGGAGGAGCGCTATGTGCCCCGCGCCTCCTACTTCCAATGTGTGCAGA
GGGAGATCAAGCCGCACATGCGGAAGATGCTGGCGTACTGGATGCTGGAGGTGTGTGAGG
AGCAGCGCTGTGAGGAGGAAGTCTTCCCCCTGGCCATGAACTACCTGGATCGCTACCTGT
CCTGCGTCCCCACCCGCAAGGCGCAGTTGCAGCTCCTGGGTGCGGTCTGCATGCTGCTGG
CCTCCAAGCTGCGCGAGACTACGCCCCTGACCATCGAAAAACTGTGCATCTACACGGACC
ACTCTGTCTCTCCCCGCCAGCTGCGGGATTGGGAGGTGCTGGTCCTGGGGAAGCTCAAGT
GGGACCTGGCCGCTGTGATTGCCCATGATTTCCTGGCTCTGATTCTCCACCGGCTCGCTC
TGCCCCGTGACCGACAGGCCTTGGTCAAAAAGCACGCCCAGACCTTTTTGGCCCTCTGTG
CTACAGATTACACCTTTGCCATGTACCCGCCATCCATGATCGCCACGGGCAGCATTGGGG
CTGCAGTGCAAGGCCTGGGTGCCTGCTCCACATCTGGAGATGAGCTCACGGAGCTGCTGG
CTGGGATCACAGGCACTGAAGTGGACTGCCTGCGGGCCTGTCAGGAGCAGATCGAAGCTG
CCCTCAGGGAGAGCCTCAGGGAAGCCGCCCAGACCTCCCCCAGCCCAGCGCCCAAAGCCC
CCAGGGGCTCCAGCAGCCAGGGGCCCAGCCAGACCAGCACTCCCACAGATGTCACAGCCA
TCCACCTGTAGCCCTGGAGAGGCCCCCTCGAGTGGCCACCGACAGCAGAGGAGGGGACAC
TGCCACCCCCTCTCCTCCCTGCCTGCAGGAACGAACCATGCCACAGCCGAAGCCCGAGGG
GGCTCCTTCTTACTCGCCCCTCGCAAGCCGAAGGGCCAGGTCCTACCTATCCTTGCAGCG
TGCACTAAGGGCCCAGCCGGCTGTGCTGGTGGCCAGTCAGGCTCCTCCTTCTCCCCGCAT
CTGACTCTGCTCCTTCCCATTCCACTAGGGGTGGGCCAGACTGGCCAGAGATGAAATTGC
AGTAGGTAAAATACATGCACCAGCATTCCTTCTGGGGGACCCCATATCCTGGGGCTCTCG
TGTTCTCGACTGCCAAAACCCTCTGATGCCTTGTAAAGGTGCTGCACCCTCTAGTTACTG
CATTTGGATTGGAGTCTTTCTGCAGAACCTTCAGATGGTGCGAGGGGAGTCTGGACAAGT
CCTCGCAAGGCACTTGGAGGCCCCTGCGTAATCCATGTCCCCAGCTGCTCCTGGGGGAGG
GGCCCCAGCTTCTGTCCGACTCCCTTGCTTGGCTTTTTGCTCAGCTTCTCCTGTGTGATT
TGGGGGCCGGGGGGAGAAGGTCAGTGCTAAAGGAAGAGGTTTTAATTTATTAATTGCTTT
AAGTACAACTATAAGAAGGTGTGGTGGGCCCCTCTACCCCGAGCGGTGGTAACCCTGGTG
GTTGCTGCATCCCTCCCCTCTGCTGCTGCTGGCTCGAGGATCTTTGTGGCCAAGGAGCTG
CTACAGCCTGGGAAGGGCCGTGCCCTCCTCTCCCTCTGGCCCATCCTCGGGGTGGGGGGG
GAGGTGAAGCAGGGATGACCTGGAGGTGACGGCCCCCGACTGGAGAGGGAGGCAAGCCCT
GTTGACACAGGTCTTTCCTAAGGCCACAAGGTCCAGGCTGGTGGCCCAGGACCATCATGC
TATGTTAATAAAAATTCTGGAATAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCACCAGTCCCGCGCCCCGCGCTCTCCGGCCCGCCGCCTTGCGTTCTGGCTCGCCAGCCC
GCACTCCCGCCCTGCCCGTGCGCTGCCCGAGTATGGAGCTGCTGTGCTGCGAGGGCACCC
GGCACGCGCCCCGGGCCGGGCCGGCCTGAGCCTGGATATTTGGGGAAGGGGTCCTGCAAA
GCCTGCTCCGCCTGGAGGAGCGCTATGTGCCCCGCGCCTCCTACTTCCAATGTGTGCAGA
GGGAGATCAAGCCGCACATGCGGAAGATGCTGGCGTACTGGATGCTGGAGGTGTGTGAGG
AGCAGCGCTGTGAGGAGGAAGTCTTCCCCCTGGCCATGAACTACCTGGATCGCTACCTGT
CCTGCGTCCCCACCCGCAAGGCGCAGTTGCAGCTCCTGGGTGCGGTCTGCATGCTGCTGG
CCTCCAAGCTGCGCGAGACTACGCCCCTGACCATCGAAAAACTGTGCATCTACACGGACC
ACTCTGTCTCTCCCCGCCAGCTGCGGGATTGGGAGGTGCTGGTCCTGGGGAAGCTCAAGT
GGGACCTGGCCGCTGTGATTGCCCATGATTTCCTGGCTCTGATTCTCCACCGGCTCGCTC
TGCCCCGTGACCGACAGGCCTTGGTCAAAAAGCACGCCCAGACCTTTTTGGCCCTCTGTG
CTACAGATTACACCTTTGCCATGTACCCGCCATCCATGATCGCCACGGGCAGCATTGGGG
CTGCAGTGCAAGGCCTGGGTGCCTGCTCCACATCTGGAGATGAGCTCACGGAGCTGCTGG
CTGGGATCACAGGCACTGAAGTGGACTGCCTGCGGGCCTGTCAGGAGCAGATCGAAGCTG
CCCTCAGGGAGAGCCTCAGGGAAGCCGCCCAGACCTCCCCCAGCCCAGCGCCCAAAGCCC
CCAGGGGCTCCAGCAGCCAGGGGCCCAGCCAGACCAGCACTCCCACAGATGTCACAGCCA
TCCACCTGTAGCCCTGGAGAGGCCCCCTCGAGTGGCCACCGACAGCAGAGGAGGGGACAC
TGCCACCCCCTCTCCTCCCTGCCTGCAGGAACGAACCATGCCACAGCCGAAGCCCGAGGG
GGCTCCTTCTTACTCGCCCCTCGCAAGCCGAAGGGCCAGGTCCTACCTATCCTTGCAGCG
TGCACTAAGGGCCCAGCCGGCTGTGCTGGTGGCCAGTCAGGCTCCTCCTTCTCCCCGCAT
CTGACTCTGCTCCTTCCCATTCCACTAGGGGTGGGCCAGACTGGCCAGAGATGAAATTGC
AGTAGGTAAAATACATGCACCAGCATTCCTTCTGGGGGACCCCATATCCTGGGGCTCTCG
TGTTCTCGACTGCCAAAACCCTCTGATGCCTTGTAAAGGTGCTGCACCCTCTAGTTACTG
CATTTGGATTGGAGTCTTTCTGCAGAACCTTCAGATGGTGCGAGGGGAGTCTGGACAAGT
CCTCGCAAGGCACTTGGAGGCCCCTGCGTAATCCATGTCCCCAGCTGCTCCTGGGGGAGG
GGCCCCAGCTTCTGTCCGACTCCCTTGCTTGGCTTTTTGCTCAGCTTCTCCTGTGTGATT
TGGGGGCCGGGGGGAGAAGGTCAGTGCTAAAGGAAGAGGTTTTAATTTATTAATTGCTTT
AAGTACAACTATAAGAAGGTGTGGTGGGCCCCTCTACCCCGAGCGGTGGTAACCCTGGTG
GTTGCTGCATCCCTCCCCTCTGCTGCTGCTGGCTCGAGGATCTTTGTGGCCAAGGAGCTG
CTACAGCCTGGGAAGGGCCGTGCCCTCCTCTCCCTCTGGCCCATCCTCGGGGTGGGGGGG
GAGGTGAAGCAGGGATGACCTGGAGGTGACGGCCCCCGACTGGAGAGGGAGGCAAGCCCT
GTTGACACAGGTCTTTCCTAAGGCCACAAGGTCCAGGCTGGTGGCCCAGGACCATCATGC
TATGTTAATAAAAATTCTGGAATAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
5-292, gnl|bosTau2|chr23 (15425784-15425498) |
|
5-292, gnl|Hg17|chr6 (42017448-42017166) |
|
5-292, gnl|Mm7|chr17 (45730107-45730394) |
| |
|
501-666, gnl|bosTau2|chr23 (15421446-15421281) |
|
501-666, gnl|Hg17|chr6 (42013116-42012951) |
|
501-666, gnl|Mm7|chr17 (45733954-45734119) |
| |
|
803-1319, gnl|bosTau2|chr23 (15420153-15419650) |
|
803-1319, gnl|Hg17|chr6 (42011824-42011310) |
|
803-1319, gnl|Mm7|chr17 (45735148-45735650) |
| |
|
1371-1947, gnl|bosTau2|chr23 (15419575-15418963) |
|
1371-1947, gnl|Hg17|chr6 (42011260-42010668) |
|
1371-1947, gnl|Mm7|chr17 (45735699-45736230) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
5-292, gnl|bosTau2|chr23 (15425784-15425498) |
|
5-292, gnl|Hg17|chr6 (42017448-42017166) |
|
5-292, gnl|Mm7|chr17 (45730107-45730394) |
| |
|
501-666, gnl|bosTau2|chr23 (15421446-15421281) |
|
501-666, gnl|Hg17|chr6 (42013116-42012951) |
|
501-666, gnl|Mm7|chr17 (45733954-45734119) |
| |
|
803-1319, gnl|bosTau2|chr23 (15420153-15419650) |
|
803-1319, gnl|Hg17|chr6 (42011824-42011310) |
|
803-1319, gnl|Mm7|chr17 (45735148-45735650) |
| |
|
1371-1947, gnl|bosTau2|chr23 (15419575-15418963) |
|
1371-1947, gnl|Hg17|chr6 (42011260-42010668) |
|
1371-1947, gnl|Mm7|chr17 (45735699-45736230) |
|
med (0.930016) |
|
cov (0.660764) |
|
ebs (0.591506) |
|
nco (0.323468) |
|
hyp (0.285673) |
|
cly (0.241284) |
|
clu (0.239292) |
|
nlu (0.191681) |
|
fty (0.17584) |
|
ill (0.175593) |
|
nje (0.16592) |
|
csp (0.161186) |
|
cag (0.151194) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
che (0.136314) |
|
ute (0.132784) |
|
jca (0.11396) |
|
jej (0.0989218) |
|
med (0.930016) |
|
cov (0.660764) |
|
ebs (0.591506) |
|
nco (0.323468) |
|
hyp (0.285673) |
|
cly (0.241284) |
|
clu (0.239292) |
|
nlu (0.191681) |
|
fty (0.17584) |
|
ill (0.175593) |
|
nje (0.16592) |
|
csp (0.161186) |
|
cag (0.151194) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
che (0.136314) |
|
ute (0.132784) |
|
jca (0.11396) |
|
jej (0.0989218) |