Non-Coding RNA Search

Ss1.1-rebs32c_m19.5

Sequence:


               
               TTTTTTTTTTTTTTGTTCTTCCATGCCTTTATTGGTGACAGTGATGGACAACAACAATGG
CAGGCACAGCAGACACCCTGGCCCAGCACCTGGGGTGGCAAGCAAGCCCTGCAGGGCCGC
GGGCACATCCAGCTCTCGCACAAGGGCCAGTCTACCCAGGCCATGTCCCCGAATGGGCAG
GAGGCCGTCTGTCCAGTTTGTACGTGTGGATCAGCCTGTCTGAGTGTCTGAGCCGCTGTC
GGCAGGGCACCCCCATCCTCGGCACATGATAGGGGCTGTTGTGAACACAACGTGGCATCC
CCCGGTGGACCACAGGGCCCCGGTGCTGACCATGGGGGACAGAGCTGGCGACCGGTGGAG
GCAGGGGGGCAGGCCCAAAGTTCACTCCAGGGCCACATCCTAAATGGGGTGGCATCGAGA
AGTCTTCTGTTGGATTATAATTGAAGAATTCATGGGGTGGGAAGGGCTGGCCTGGGAAAA
AAGGGGGCTCCTGGGGCAGGGGTGGAAACAGAGGAAGTGGGGAGGGCTGAGGAAGAGGGG
AGGGAAAAGGCATGGGAGGGGGCAAGGAAGAGGGCGGGGGCAAGGCCAGCTGCTCCCCGA
AGTCTGGGGGCTGCCCCTGGCTCCCCTGGAAGAGATGATCCGGCTCTGGCCAGTCCTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTGTTCTTCCATGCCTTTATTGGTGACAGTGATGGACAACAACAATGG
CAGGCACAGCAGACACCCTGGCCCAGCACCTGGGGTGGCAAGCAAGCCCTGCAGGGCCGC
GGGCACATCCAGCTCTCGCACAAGGGCCAGTCTACCCAGGCCATGTCCCCGAATGGGCAG
GAGGCCGTCTGTCCAGTTTGTACGTGTGGATCAGCCTGTCTGAGTGTCTGAGCCGCTGTC
GGCAGGGCACCCCCATCCTCGGCACATGATAGGGGCTGTTGTGAACACAACGTGGCATCC
CCCGGTGGACCACAGGGCCCCGGTGCTGACCATGGGGGACAGAGCTGGCGACCGGTGGAG
GCAGGGGGGCAGGCCCAAAGTTCACTCCAGGGCCACATCCTAAATGGGGTGGCATCGAGA
AGTCTTCTGTTGGATTATAATTGAAGAATTCATGGGGTGGGAAGGGCTGGCCTGGGAAAA
AAGGGGGCTCCTGGGGCAGGGGTGGAAACAGAGGAAGTGGGGAGGGCTGAGGAAGAGGGG
AGGGAAAAGGCATGGGAGGGGGCAAGGAAGAGGGCGGGGGCAAGGCCAGCTGCTCCCCGA
AGTCTGGGGGCTGCCCCTGGCTCCCCTGGAAGAGATGATCCGGCTCTGGCCAGTCCTCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55650995|ref|XP_514475.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55650995|ref|XP_514475.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               14-132, - strand, RNAz p=0.738746
               

               
               29-148, - strand, RNAz p=0.623924

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-132, - strand, RNAz p=0.738746
               

               
               29-148, - strand, RNAz p=0.623924

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of BC014247, -
               

               
               5' of BC014247, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC014247, -
               

               
               5' of BC014247, -

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               14-402, gnl|bosTau2|chr13 (41401568-41401951)
               

               
               14-402, gnl|canFam2|chr24 (21426983-21426325)
               

               
               14-402, gnl|echTel1|scaffold_319903 (4919-4282)
               

               
               14-402, gnl|hg17|chr20 (2763738-2764413)
               

               
               14-402, gnl|Hg17|chr20 (2763970-2764358)
               

               
               14-402, gnl|loxAfr1|scaffold_13823 (4536-3868)
               

               
               14-402, gnl|mm7|chr2 (130159626-130160229)
               

               
               14-402, gnl|Mm7|chr2 (130159820-130160189)
               

               
               14-402, gnl|oryCun1|scaffold_169369 (7469-6814)
               

               
               14-402, gnl|panTro1|chr21 (2740459-2741134)
               

               
               14-402, gnl|rheMac2|chr10 (36143374-36144056)
               

               
               14-402, gnl|rn3|chr3 (117937596-117938220)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-402, gnl|bosTau2|chr13 (41401568-41401951)
               

               
               14-402, gnl|canFam2|chr24 (21426983-21426325)
               

               
               14-402, gnl|echTel1|scaffold_319903 (4919-4282)
               

               
               14-402, gnl|hg17|chr20 (2763738-2764413)
               

               
               14-402, gnl|Hg17|chr20 (2763970-2764358)
               

               
               14-402, gnl|loxAfr1|scaffold_13823 (4536-3868)
               

               
               14-402, gnl|mm7|chr2 (130159626-130160229)
               

               
               14-402, gnl|Mm7|chr2 (130159820-130160189)
               

               
               14-402, gnl|oryCun1|scaffold_169369 (7469-6814)
               

               
               14-402, gnl|panTro1|chr21 (2740459-2741134)
               

               
               14-402, gnl|rheMac2|chr10 (36143374-36144056)
               

               
               14-402, gnl|rn3|chr3 (117937596-117938220)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ebs (0.473205)
               

               
               fhi (0.339155)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cov (0.132153)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.473205)
               

               
               fhi (0.339155)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cov (0.132153)

	14-132, - strand, RNAz p=0.738746
	29-148, - strand, RNAz p=0.623924

	14-402, gnl\|bosTau2\|chr13 (41401568-41401951)
	14-402, gnl\|canFam2\|chr24 (21426983-21426325)
	14-402, gnl\|echTel1\|scaffold_319903 (4919-4282)
	14-402, gnl\|hg17\|chr20 (2763738-2764413)
	14-402, gnl\|Hg17\|chr20 (2763970-2764358)
	14-402, gnl\|loxAfr1\|scaffold_13823 (4536-3868)
	14-402, gnl\|mm7\|chr2 (130159626-130160229)
	14-402, gnl\|Mm7\|chr2 (130159820-130160189)
	14-402, gnl\|oryCun1\|scaffold_169369 (7469-6814)
	14-402, gnl\|panTro1\|chr21 (2740459-2741134)
	14-402, gnl\|rheMac2\|chr10 (36143374-36144056)
	14-402, gnl\|rn3\|chr3 (117937596-117938220)

	ebs (0.473205)
	fhi (0.339155)
	fcc (0.197785)
	eye (0.170503)
	hyp (0.142837)
	pty (0.142714)
	cov (0.132153)