Non-Coding RNA Search

Ss1.1-rebs32c_o4.5

Sequence:


               
               CTCGCGATGGAGGAGGAGGGCTCCGGCTGCAACGTGCCTCGCCTGCCCTGGGCGTCCATC
CTGCGGGCGGCTTTGCTGCTGCTTCTCATTGGCATGGTCATATACTGCTTCCTCTGCGGT
CAGCGCTTCACCCAGCAACAGCTGGATTCAACTGGGTGGGACTTAGCCGAGCTCCTGTTG
AATCACACAGAATCACGGCAGGATCCCAGGCTGCGCTGGCAGGGCAGCCCCGCTTTGGGC
CGATCCTTCGTGCATGGGCCAGAGCTGGACAACGGGCAGCTGCGCATCCAACGCACTGGC
ATCTACCGACTGCACATCCAGGTGACATTGACGAACTGCTCTTCCTCCACTTGGACCGTC
ATGCCCCGTCAGGCCACCCTGACTTTGGGTATCTGCTCCCCCACCACCCACAGCATTAGC
CTGCTACGCCTCAACTTTCACCATACATGCCGTGTGGCCTCCCAGCGCCTAACACCCTTA
GCTAAAGGGGATGTTCTCTGTACCAACCGCACTCTGCCTCTGCTGCCTTCCAGAAATGCT
GATGAGACCTTTTTTGGAGTTCAGCTGGTGCGCCCTTGACCATTGCACCTCTTGGGCCAA
ATTTTTTTTTTATCTTAAATTTATTCCTAGATATTTTTTAAAATAAAAAAAATAAAATAG
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGCGATGGAGGAGGAGGGCTCCGGCTGCAACGTGCCTCGCCTGCCCTGGGCGTCCATC
CTGCGGGCGGCTTTGCTGCTGCTTCTCATTGGCATGGTCATATACTGCTTCCTCTGCGGT
CAGCGCTTCACCCAGCAACAGCTGGATTCAACTGGGTGGGACTTAGCCGAGCTCCTGTTG
AATCACACAGAATCACGGCAGGATCCCAGGCTGCGCTGGCAGGGCAGCCCCGCTTTGGGC
CGATCCTTCGTGCATGGGCCAGAGCTGGACAACGGGCAGCTGCGCATCCAACGCACTGGC
ATCTACCGACTGCACATCCAGGTGACATTGACGAACTGCTCTTCCTCCACTTGGACCGTC
ATGCCCCGTCAGGCCACCCTGACTTTGGGTATCTGCTCCCCCACCACCCACAGCATTAGC
CTGCTACGCCTCAACTTTCACCATACATGCCGTGTGGCCTCCCAGCGCCTAACACCCTTA
GCTAAAGGGGATGTTCTCTGTACCAACCGCACTCTGCCTCTGCTGCCTTCCAGAAATGCT
GATGAGACCTTTTTTGGAGTTCAGCTGGTGCGCCCTTGACCATTGCACCTCTTGGGCCAA
ATTTTTTTTTTATCTTAAATTTATTCCTAGATATTTTTTAAAATAAAAAAAATAAAATAG
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61842163|ref|XP_600347.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842163|ref|XP_600347.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               188-606, gnl|bosTau2|chr7 (13818476-13818900)
               

               
               188-606, gnl|Hg17|chr19 (6537419-6537007)
               

               
               188-606, gnl|Mm7|chr17 (55357696-55357286)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               188-606, gnl|bosTau2|chr7 (13818476-13818900)
               

               
               188-606, gnl|Hg17|chr19 (6537419-6537007)
               

               
               188-606, gnl|Mm7|chr17 (55357696-55357286)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               ebs (0.118301)

	188-606, gnl\|bosTau2\|chr7 (13818476-13818900)
	188-606, gnl\|Hg17\|chr19 (6537419-6537007)
	188-606, gnl\|Mm7\|chr17 (55357696-55357286)