Ss1.1-rebs33c_d24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGATGAGGACAATGACCGGTTGATGGTGCGCTCAGGGGGCAGTCCCCTATCCCCAGTGA TCTATGACTCGGACATGGACGATGTCCCAGAACGAGGTCTCATCAGTGATGCCCAGTCCC TCTATGTGGAGCTGCTTTCAGAGACACCTGCCAATCCCCTGCTGCTAAGCCTCCGATTTG AAGCTTTTGAGGAAGATCGCTGCTTCGCCCCCTTCCTGGCACATGGCAATGTCACCACCA CGGACCCTGAGTACCGCCCAGGGACACTGGCCACCTTCTCCTGCCTCCCAGGATATGCCC TAGAGCCCCCTGGCCCCCCCAGTGCCATCGAATGTGTGGATCCCACAGAACCCCACTGGA ATGACACAGAGCCAGCCTGCAAGGCCATGTGTGGAGGGGAGCTGTCAGAGCCGGCCGGCG TGGTCCTCTCTCCCGACTGGCCCCAGAGCTATAGCCCTGGCCAAGACTGTGTGTGGGGTC TGCACGTCCAGGAAGAGAAGCGCATCTTGCTCCAAGTTGAGATCTTGAATGTGCGCGAAG GGGATATGCTGACGTTGTTCGACGGGGACGGTCCCAGTGCCCGAGTCCTGGCCCAACTGC GGGGACCTCAGCCTCGCCGCCGCCTCCTTTCCTCTGGGCCGGACCTCACGCTGCAGTTCC AGGCACCGCCCGGACCCCCAAACCCGGGCCTGGGCCAGGGTTTCGTGTTGCACTTCAAAG AGGTCCCGAGGAACGACACGTGCCCCGAGCTGCCGCCTCCGGAGTGGGGCTGGAGGACGG CTTCCCATGGGGACCTGATGCGGGGGGCGGTGCTTACCTACCAGTGCGAGCCTGGCTACG ATCTGCTCGGCTCCGACATTCTCACCTGCCAGTGGGACCTGTCCTGGAGCGCTGCGCCGC CCGCCTGCCAAAAGATCATGACTTGTGCTGACCCTGGGGAGATCACCAACGGACACCGTA CCACCTCGGATGCTGGCTTCCCTGTTGGCTCTCACGTCCAGTACCGCTGTCTGCCCGGGT ACAGCCTGGAGGGGGCGGCCGTACTCACCTGCTACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGATGAGGACAATGACCGGTTGATGGTGCGCTCAGGGGGCAGTCCCCTATCCCCAGTGA TCTATGACTCGGACATGGACGATGTCCCAGAACGAGGTCTCATCAGTGATGCCCAGTCCC TCTATGTGGAGCTGCTTTCAGAGACACCTGCCAATCCCCTGCTGCTAAGCCTCCGATTTG AAGCTTTTGAGGAAGATCGCTGCTTCGCCCCCTTCCTGGCACATGGCAATGTCACCACCA CGGACCCTGAGTACCGCCCAGGGACACTGGCCACCTTCTCCTGCCTCCCAGGATATGCCC TAGAGCCCCCTGGCCCCCCCAGTGCCATCGAATGTGTGGATCCCACAGAACCCCACTGGA ATGACACAGAGCCAGCCTGCAAGGCCATGTGTGGAGGGGAGCTGTCAGAGCCGGCCGGCG TGGTCCTCTCTCCCGACTGGCCCCAGAGCTATAGCCCTGGCCAAGACTGTGTGTGGGGTC TGCACGTCCAGGAAGAGAAGCGCATCTTGCTCCAAGTTGAGATCTTGAATGTGCGCGAAG GGGATATGCTGACGTTGTTCGACGGGGACGGTCCCAGTGCCCGAGTCCTGGCCCAACTGC GGGGACCTCAGCCTCGCCGCCGCCTCCTTTCCTCTGGGCCGGACCTCACGCTGCAGTTCC AGGCACCGCCCGGACCCCCAAACCCGGGCCTGGGCCAGGGTTTCGTGTTGCACTTCAAAG AGGTCCCGAGGAACGACACGTGCCCCGAGCTGCCGCCTCCGGAGTGGGGCTGGAGGACGG CTTCCCATGGGGACCTGATGCGGGGGGCGGTGCTTACCTACCAGTGCGAGCCTGGCTACG ATCTGCTCGGCTCCGACATTCTCACCTGCCAGTGGGACCTGTCCTGGAGCGCTGCGCCGC CCGCCTGCCAAAAGATCATGACTTGTGCTGACCCTGGGGAGATCACCAACGGACACCGTA CCACCTCGGATGCTGGCTTCCCTGTTGGCTCTCACGTCCAGTACCGCTGTCTGCCCGGGT ACAGCCTGGAGGGGGCGGCCGTACTCACCTGCTACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 200-316, + strand, RNAz p=0.78416 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 200-316, + strand, RNAz p=0.78416 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 182-384, gnl|bosTau2|chr25 (24598873-24598671) | |
| 182-384, gnl|canFam2|chr6 (20940236-20940417) | |
| 182-384, gnl|danRer3|chr3 (8177739-8177905) | |
| 182-384, gnl|dasNov1|scaffold_60321 (5978-5794) | |
| 182-384, gnl|echTel1|scaffold_215365 (1078-897) | |
| 182-384, gnl|fr1|chrUn (165433124-165432938) | |
| 182-384, gnl|galGal2|chr15 (7087759-7087598) | |
| 182-384, gnl|hg17|chr16 (29798668-29798849) | |
| 182-384, gnl|Hg17|chr16 (29798888-29798686) | |
| 182-384, gnl|loxAfr1|scaffold_608 (164599-164438) | |
| 182-384, gnl|mm7|chr7 (123058514-123058334) | |
| 182-384, gnl|Mm7|chr7 (123058293-123058495) | |
| 182-384, gnl|monDom2|scaffold_5 (119830351-119830172) | |
| 182-384, gnl|oryCun1|scaffold_106345 (12906-12737) | |
| 182-384, gnl|panTro1|chr18 (30560397-30560216) | |
| 182-384, gnl|rheMac2|chr20 (27832768-27832949) | |
| 182-384, gnl|rn3|chr1 (186288814-186288634) | |
| 182-384, gnl|tetNig1|chrUn_random (40445313-40445473) | |
| 182-384, gnl|xenTro1|scaffold_805 (58781-58957) | |
| 524-720, gnl|bosTau2|chr25 (24597215-24597019) | |
| 524-720, gnl|canFam2|chr6 (20938661-20938892) | |
| 524-720, gnl|danRer3|chr3 (8173579-8173784) | |
| 524-720, gnl|dasNov1|scaffold_60321 (7570-7339) | |
| 524-720, gnl|echTel1|scaffold_215365 (2822-2629) | |
| 524-720, gnl|fr1|chrUn (165434175-165433967) | |
| 524-720, gnl|galGal2|chr15 (7089789-7089559) | |
| 524-720, gnl|hg17|chr16 (29796092-29796323) | |
| 524-720, gnl|Hg17|chr16 (29796289-29796093) | |
| 524-720, gnl|mm7|chr7 (123060022-123059792) | |
| 524-720, gnl|Mm7|chr7 (123059823-123060019) | |
| 524-720, gnl|monDom2|scaffold_5 (119832156-119831924) | |
| 524-720, gnl|oryCun1|scaffold_167538 (4703-4934) | |
| 524-720, gnl|panTro1|chr18 (30555115-30555346) | |
| 524-720, gnl|rheMac2|chr20 (27829943-27830174) | |
| 524-720, gnl|rn3|chr1 (186290294-186290065) | |
| 524-720, gnl|tetNig1|chrUn_random (90893837-90893642) | |
| 524-720, gnl|xenTro1|scaffold_805 (57540-57752) | |
| 899-1056, gnl|bosTau2|chr25 (24594709-24594553) | |
| 899-1056, gnl|canFam2|chr6 (20936121-20936311) | |
| 899-1056, gnl|danRer3|chr3 (8170026-8170218) | |
| 899-1056, gnl|dasNov1|scaffold_17926 (18103-18293) | |
| 899-1056, gnl|echTel1|scaffold_318787 (55280-55470) | |
| 899-1056, gnl|fr1|chrUn (165435261-165435068) | |
| 899-1056, gnl|galGal2|chr15 (7090592-7090401) | |
| 899-1056, gnl|hg17|chr16 (29792354-29792544) | |
| 899-1056, gnl|Hg17|chr16 (29792567-29792411) | |
| 899-1056, gnl|loxAfr1|scaffold_187796 (209-20) | |
| 899-1056, gnl|mm7|chr7 (123063482-123063292) | |
| 899-1056, gnl|Mm7|chr7 (123063268-123063423) | |
| 899-1056, gnl|monDom2|scaffold_5 (119833788-119833598) | |
| 899-1056, gnl|oryCun1|scaffold_138023 (3868-4058) | |
| 899-1056, gnl|panTro1|chr18 (30551371-30551561) | |
| 899-1056, gnl|rheMac2|chr20 (27825922-27826112) | |
| 899-1056, gnl|rn3|chr1 (186294013-186293823) | |
| 899-1056, gnl|tetNig1|chrUn_random (40443460-40443653) | |
| 899-1056, gnl|xenTro1|scaffold_805 (55645-55835) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 182-384, gnl|bosTau2|chr25 (24598873-24598671) | |
| 182-384, gnl|canFam2|chr6 (20940236-20940417) | |
| 182-384, gnl|danRer3|chr3 (8177739-8177905) | |
| 182-384, gnl|dasNov1|scaffold_60321 (5978-5794) | |
| 182-384, gnl|echTel1|scaffold_215365 (1078-897) | |
| 182-384, gnl|fr1|chrUn (165433124-165432938) | |
| 182-384, gnl|galGal2|chr15 (7087759-7087598) | |
| 182-384, gnl|hg17|chr16 (29798668-29798849) | |
| 182-384, gnl|Hg17|chr16 (29798888-29798686) | |
| 182-384, gnl|loxAfr1|scaffold_608 (164599-164438) | |
| 182-384, gnl|mm7|chr7 (123058514-123058334) | |
| 182-384, gnl|Mm7|chr7 (123058293-123058495) | |
| 182-384, gnl|monDom2|scaffold_5 (119830351-119830172) | |
| 182-384, gnl|oryCun1|scaffold_106345 (12906-12737) | |
| 182-384, gnl|panTro1|chr18 (30560397-30560216) | |
| 182-384, gnl|rheMac2|chr20 (27832768-27832949) | |
| 182-384, gnl|rn3|chr1 (186288814-186288634) | |
| 182-384, gnl|tetNig1|chrUn_random (40445313-40445473) | |
| 182-384, gnl|xenTro1|scaffold_805 (58781-58957) | |
| 524-720, gnl|bosTau2|chr25 (24597215-24597019) | |
| 524-720, gnl|canFam2|chr6 (20938661-20938892) | |
| 524-720, gnl|danRer3|chr3 (8173579-8173784) | |
| 524-720, gnl|dasNov1|scaffold_60321 (7570-7339) | |
| 524-720, gnl|echTel1|scaffold_215365 (2822-2629) | |
| 524-720, gnl|fr1|chrUn (165434175-165433967) | |
| 524-720, gnl|galGal2|chr15 (7089789-7089559) | |
| 524-720, gnl|hg17|chr16 (29796092-29796323) | |
| 524-720, gnl|Hg17|chr16 (29796289-29796093) | |
| 524-720, gnl|mm7|chr7 (123060022-123059792) | |
| 524-720, gnl|Mm7|chr7 (123059823-123060019) | |
| 524-720, gnl|monDom2|scaffold_5 (119832156-119831924) | |
| 524-720, gnl|oryCun1|scaffold_167538 (4703-4934) | |
| 524-720, gnl|panTro1|chr18 (30555115-30555346) | |
| 524-720, gnl|rheMac2|chr20 (27829943-27830174) | |
| 524-720, gnl|rn3|chr1 (186290294-186290065) | |
| 524-720, gnl|tetNig1|chrUn_random (90893837-90893642) | |
| 524-720, gnl|xenTro1|scaffold_805 (57540-57752) | |
| 899-1056, gnl|bosTau2|chr25 (24594709-24594553) | |
| 899-1056, gnl|canFam2|chr6 (20936121-20936311) | |
| 899-1056, gnl|danRer3|chr3 (8170026-8170218) | |
| 899-1056, gnl|dasNov1|scaffold_17926 (18103-18293) | |
| 899-1056, gnl|echTel1|scaffold_318787 (55280-55470) | |
| 899-1056, gnl|fr1|chrUn (165435261-165435068) | |
| 899-1056, gnl|galGal2|chr15 (7090592-7090401) | |
| 899-1056, gnl|hg17|chr16 (29792354-29792544) | |
| 899-1056, gnl|Hg17|chr16 (29792567-29792411) | |
| 899-1056, gnl|loxAfr1|scaffold_187796 (209-20) | |
| 899-1056, gnl|mm7|chr7 (123063482-123063292) | |
| 899-1056, gnl|Mm7|chr7 (123063268-123063423) | |
| 899-1056, gnl|monDom2|scaffold_5 (119833788-119833598) | |
| 899-1056, gnl|oryCun1|scaffold_138023 (3868-4058) | |
| 899-1056, gnl|panTro1|chr18 (30551371-30551561) | |
| 899-1056, gnl|rheMac2|chr20 (27825922-27826112) | |
| 899-1056, gnl|rn3|chr1 (186294013-186293823) | |
| 899-1056, gnl|tetNig1|chrUn_random (40443460-40443653) | |
| 899-1056, gnl|xenTro1|scaffold_805 (55645-55835) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |