Non-Coding RNA Search

Ss1.1-rebs33c_e3.5

Sequence:


               
               GATCGACAAAAGAACCATCGAAAAGTTCGAAAAAGAGGCTGCGGAGATGGGAAAGGGCTC
CTTCAAGTATGCCTGGGTCTGGGACAAACTAAAGGCTGAACGTGAGCGTGGTATTACCAT
GGACATCTCCCTGTGGAAATTCGAGACCAGCAAGTACTACGTGACCATCATGGATGCTCC
AGGACACAGAGACTTTATTAAGAACATGATTACAGGCACTTCCCAGGCTGACTGTGCTGT
CCTGATGGTTGCTGCTGGTGTGGGTGAATTCGAAGCAGGTATTTCCAAGAACGGGCAGAC
CCGTGAGCATGCTCTTCTGGCCTACACCCTGGGTGTGAAACAGCTCATGGTGGGCGTTAA
CAAAAGGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAAGAGATGGTAAAGGA
AGTCAGCACCTACATTAAGAAAATGGGCTACAACCCTGATACAGTAGCATTGGTGCCAAT
TTCTGGCTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAATATGCCTGGGTTCAAGGG
ATGGAAAGTCACCCGTAAAGATGGCAATGCCAGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCGACAAAAGAACCATCGAAAAGTTCGAAAAAGAGGCTGCGGAGATGGGAAAGGGCTC
CTTCAAGTATGCCTGGGTCTGGGACAAACTAAAGGCTGAACGTGAGCGTGGTATTACCAT
GGACATCTCCCTGTGGAAATTCGAGACCAGCAAGTACTACGTGACCATCATGGATGCTCC
AGGACACAGAGACTTTATTAAGAACATGATTACAGGCACTTCCCAGGCTGACTGTGCTGT
CCTGATGGTTGCTGCTGGTGTGGGTGAATTCGAAGCAGGTATTTCCAAGAACGGGCAGAC
CCGTGAGCATGCTCTTCTGGCCTACACCCTGGGTGTGAAACAGCTCATGGTGGGCGTTAA
CAAAAGGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAAGAGATGGTAAAGGA
AGTCAGCACCTACATTAAGAAAATGGGCTACAACCCTGATACAGTAGCATTGGTGCCAAT
TTCTGGCTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAATATGCCTGGGTTCAAGGG
ATGGAAAGTCACCCGTAAAGATGGCAATGCCAGTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879923|ref|XP_600690.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879923|ref|XP_600690.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               287-576, + strand, RNAz p=0.981535

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               287-576, + strand, RNAz p=0.981535

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-576, gnl|bosTau2|chr10 (14624028-14623464)
               

               
               9-576, gnl|Hg17|chr7 (22324753-22324186)
               

               
               9-576, gnl|Mm7|chr2 (40563143-40563711)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-576, gnl|bosTau2|chr10 (14624028-14623464)
               

               
               9-576, gnl|Hg17|chr7 (22324753-22324186)
               

               
               9-576, gnl|Mm7|chr2 (40563143-40563711)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	9-576, gnl\|bosTau2\|chr10 (14624028-14623464)
	9-576, gnl\|Hg17\|chr7 (22324753-22324186)
	9-576, gnl\|Mm7\|chr2 (40563143-40563711)

	nco (0.161734)
	lnt (0.142308)
	nca (0.136874)
	ebs (0.118301)
	med (0.116252)