Non-Coding RNA Search

Ss1.1-rebs33c_g22.5

Sequence:


               
               GCAGCGACTCTGAGGCAGCCGACTCGCCCAGCAGTGATGAGAGACGCATCATCGAGACCC
CGCCTCACCGCTACTAAGGCCTCCATCGCCTCCCCCCGCCCCCAGCCCAACAGAGAGAGA
GAATTTTCCCCGGGTGAGACAGACACCCCCAGAAGGGAGAGAAGGACATTCTGAGAGAAG
AGAGCCTGGGAGGGAGGGAACTCTTGGAACGAGTCATGCATCCCGTAACCTCAGAATCCC
TGGGATCCCCCCCATCCCCCTACCCCTCACTCACCCACAGCCCACCCCCTCTGTGCCTCT
GGGCGCTGACTCCCCTGGTGTGGGAGACTTTGGCTGCCTTTTCTGCCCCCAGGCAGCCGC
CCCCTTCCCTGTCTTGCCCCCCAGTGACCTGCGCTATAATGGGGGGGTGGTTAGGGACTG
AAGGAGACCCTGTCCTTTACCCTCCCCCACTCTCCTGTCCACAGAGCCCCTGATCCAGAC
CCCCCCCCCAAAGCTGGGCCTTCCCTGCTTCTCTTACGACCACCCCTTCCCATTTCACTC
TGGGGACCCCTGCTTCTTCTCCTGGTCCCCTTCCCTCCTCTTTCGTCCCCTTTCCCCTCC
TCTCCTGGCCTGAGGTCCCACAGCCCCTTCCTGCAGGACCTGGTTGTGGCTGGGTTGTGG
GGATGGGAGCCGGGGTGGGGGCCCCGGGTGTATTATATATAATGTATATTTTTTCATGTC
GTCGTGAGCGCAGCCCCTGTGTTCTGTGTGCAGCCTCGTGTGTGCGTGTGGCATCGTTAA
GTCCTGGGGTGGGGGTAGGGGGATGGGTGTGGTGGGACAGGGGACACATCCTAGGGTTTT
CAAATAAAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCGACTCTGAGGCAGCCGACTCGCCCAGCAGTGATGAGAGACGCATCATCGAGACCC
CGCCTCACCGCTACTAAGGCCTCCATCGCCTCCCCCCGCCCCCAGCCCAACAGAGAGAGA
GAATTTTCCCCGGGTGAGACAGACACCCCCAGAAGGGAGAGAAGGACATTCTGAGAGAAG
AGAGCCTGGGAGGGAGGGAACTCTTGGAACGAGTCATGCATCCCGTAACCTCAGAATCCC
TGGGATCCCCCCCATCCCCCTACCCCTCACTCACCCACAGCCCACCCCCTCTGTGCCTCT
GGGCGCTGACTCCCCTGGTGTGGGAGACTTTGGCTGCCTTTTCTGCCCCCAGGCAGCCGC
CCCCTTCCCTGTCTTGCCCCCCAGTGACCTGCGCTATAATGGGGGGGTGGTTAGGGACTG
AAGGAGACCCTGTCCTTTACCCTCCCCCACTCTCCTGTCCACAGAGCCCCTGATCCAGAC
CCCCCCCCCAAAGCTGGGCCTTCCCTGCTTCTCTTACGACCACCCCTTCCCATTTCACTC
TGGGGACCCCTGCTTCTTCTCCTGGTCCCCTTCCCTCCTCTTTCGTCCCCTTTCCCCTCC
TCTCCTGGCCTGAGGTCCCACAGCCCCTTCCTGCAGGACCTGGTTGTGGCTGGGTTGTGG
GGATGGGAGCCGGGGTGGGGGCCCCGGGTGTATTATATATAATGTATATTTTTTCATGTC
GTCGTGAGCGCAGCCCCTGTGTTCTGTGTGCAGCCTCGTGTGTGCGTGTGGCATCGTTAA
GTCCTGGGGTGGGGGTAGGGGGATGGGTGTGGTGGGACAGGGGACACATCCTAGGGTTTT
CAAATAAAACAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.805684

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.805684

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               6-118, - strand, RNAmicro p=0.999771

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               6-118, - strand, RNAmicro p=0.999771

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-612, gnl|bosTau2|chr5 (60005510-60004930)
               

               
               1-612, gnl|Hg17|chr12 (7201868-7202558)
               

               
               1-612, gnl|Mm7|chr6 (124413968-124413292)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr5 (60005510-60004930)
               

               
               1-612, gnl|Hg17|chr12 (7201868-7202558)
               

               
               1-612, gnl|Mm7|chr6 (124413968-124413292)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

	1-612, gnl\|bosTau2\|chr5 (60005510-60004930)
	1-612, gnl\|Hg17\|chr12 (7201868-7202558)
	1-612, gnl\|Mm7\|chr6 (124413968-124413292)