Non-Coding RNA Search

Ss1.1-rebs33c_i21.5

Sequence:


               
               GTCACTACACCATGGGCAAGGAGATCATGACCTCGTCTGGACCGAATTCGGAAACGGGCT
GACCAGTGCACAGGTCTTCAGGGCTTCTGGGTTTTCCACAGCTTGGGCGGGGGAACGGGT
TCTGGGTTCACCTCCCTGCTGATGGAACGTCTCTCTGTCGATTATGGCAAGAAGTCCAAG
CGGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACAGCTGTAGTTGAGCCCTACAAC
TCCATCCTCACCACCCACACCACCCTGGAGCACTCTGATGGTGCCTTCATGGTAGACAAT
GAGGCCATCTATGACATCTGTCGTAGAAACCTCGATATTGAACGCCCAACCTACACTAAC
CTGAATAGGTTGATAGGTCAGATGGTGTCCTCCATCACTGCTTCCCTGAGGTTTGATGGG
GCCCTGAATGTTGATCTGACAGAATTCCAGACCAACCTGGTGCCCTATCCCCGCATCCAT
TTCCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTT
TCTGTAGCAGAGATCACCAATGCTGGCTTGGAGCCAGCCAACCAGATGGTGAAATGTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCACTACACCATGGGCAAGGAGATCATGACCTCGTCTGGACCGAATTCGGAAACGGGCT
GACCAGTGCACAGGTCTTCAGGGCTTCTGGGTTTTCCACAGCTTGGGCGGGGGAACGGGT
TCTGGGTTCACCTCCCTGCTGATGGAACGTCTCTCTGTCGATTATGGCAAGAAGTCCAAG
CGGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACAGCTGTAGTTGAGCCCTACAAC
TCCATCCTCACCACCCACACCACCCTGGAGCACTCTGATGGTGCCTTCATGGTAGACAAT
GAGGCCATCTATGACATCTGTCGTAGAAACCTCGATATTGAACGCCCAACCTACACTAAC
CTGAATAGGTTGATAGGTCAGATGGTGTCCTCCATCACTGCTTCCCTGAGGTTTGATGGG
GCCCTGAATGTTGATCTGACAGAATTCCAGACCAACCTGGTGCCCTATCCCCGCATCCAT
TTCCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTT
TCTGTAGCAGAGATCACCAATGCTGGCTTGGAGCCAGCCAACCAGATGGTGAAATGTGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21667239|gb|AAM73997.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21667239|gb|AAM73997.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               78-197, - strand, RNAz p=0.567319
               

               
               238-397, - strand, RNAz p=0.9867
               

               
               438-600, - strand, RNAz p=0.995262

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-197, - strand, RNAz p=0.567319
               

               
               238-397, - strand, RNAz p=0.9867
               

               
               438-600, - strand, RNAz p=0.995262

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr10 (46593470-46592872)
               

               
               1-600, gnl|Hg17|chr12 (47866418-47865498)
               

               
               1-600, gnl|Mm7|chr15 (98936506-98935732)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr10 (46593470-46592872)
               

               
               1-600, gnl|Hg17|chr12 (47866418-47865498)
               

               
               1-600, gnl|Mm7|chr15 (98936506-98935732)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	78-197, - strand, RNAz p=0.567319
	238-397, - strand, RNAz p=0.9867
	438-600, - strand, RNAz p=0.995262

	1-600, gnl\|bosTau2\|chr10 (46593470-46592872)
	1-600, gnl\|Hg17\|chr12 (47866418-47865498)
	1-600, gnl\|Mm7\|chr15 (98936506-98935732)