Ss1.1-rebs33c_l10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCCGGCGGCGGCGGAAGAGATGGAGCCGCGTCACGAGCGCCCGGCCCCTTAAAACGCT GCTGGCTGGAGCCGCCTCCCTGCCTGCAGCCCGCGGCGGGGATGGAGTAGAGGGAGACCC GTTGACCTGCTCGCGGGGATCAGCGATGGAGTTAAAGCAATCTTTGTCCATCCATCTGGA AGCTGAGAAGCCTTTGAGGCGCTATGGAGCGGTGGAGGAGACGGCGTGGAAAGCGGAGGG ACTGGGGAGAAATCATCTGGACATCATTTCCATGGCCGAGACAACCATGATGCCAGAGGA GATCGAGCTGGAGATGGCGAAAATCCAGCGTCTCCGGGAAGTCTTGGTCCGACGGGAGTC TGAGCTCAGGTTTATGATGGATGACATCCAGCTCTGCAACGATATCATGGACTTGAAGCA GGAGCTGCAGAATTGGGTCGCCATCCCAGAAAAAGACAAAACCAAGTTGCAGAAGCAGAG AGAGGACGAGCTAATCCAGAAGATCCACAAACTGGTACAGAAGAGAGATTTCCTGGTGGA TGATGCAGAGGTTGAGCGGTTAAGGGAACAAGAAGAAGACAAGGAAATGGCTGATTTTCT GAGAATCAAGTTAAAACCTCTAGATAAAGTAACCAAATCTCCAGCCAGCTCCCGAGCAGA GAAGAAAGCAGAGCCCCCACCCAGCAAGCCCACGGTGGCCAAGACGGGGCTGGCGCTCAT CAAAGATTGCTGCGGGGCCACCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCCGGCGGCGGCGGAAGAGATGGAGCCGCGTCACGAGCGCCCGGCCCCTTAAAACGCT GCTGGCTGGAGCCGCCTCCCTGCCTGCAGCCCGCGGCGGGGATGGAGTAGAGGGAGACCC GTTGACCTGCTCGCGGGGATCAGCGATGGAGTTAAAGCAATCTTTGTCCATCCATCTGGA AGCTGAGAAGCCTTTGAGGCGCTATGGAGCGGTGGAGGAGACGGCGTGGAAAGCGGAGGG ACTGGGGAGAAATCATCTGGACATCATTTCCATGGCCGAGACAACCATGATGCCAGAGGA GATCGAGCTGGAGATGGCGAAAATCCAGCGTCTCCGGGAAGTCTTGGTCCGACGGGAGTC TGAGCTCAGGTTTATGATGGATGACATCCAGCTCTGCAACGATATCATGGACTTGAAGCA GGAGCTGCAGAATTGGGTCGCCATCCCAGAAAAAGACAAAACCAAGTTGCAGAAGCAGAG AGAGGACGAGCTAATCCAGAAGATCCACAAACTGGTACAGAAGAGAGATTTCCTGGTGGA TGATGCAGAGGTTGAGCGGTTAAGGGAACAAGAAGAAGACAAGGAAATGGCTGATTTTCT GAGAATCAAGTTAAAACCTCTAGATAAAGTAACCAAATCTCCAGCCAGCTCCCGAGCAGA GAAGAAAGCAGAGCCCCCACCCAGCAAGCCCACGGTGGCCAAGACGGGGCTGGCGCTCAT CAAAGATTGCTGCGGGGCCACCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 257-376, + strand, RNAz p=0.523025 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 257-376, + strand, RNAz p=0.523025 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 9-251, gnl|bosTau2|chr25 (16040787-16041029) | |
| 9-251, gnl|canFam2|chr6 (31385344-31385053) | |
| 9-251, gnl|dasNov1|scaffold_131713 (2670-2916) | |
| 9-251, gnl|echTel1|scaffold_282743 (16812-16558) | |
| 9-251, gnl|hg17|chr16 (15435794-15436045) | |
| 9-251, gnl|Hg17|chr16 (15435872-15436117) | |
| 9-251, gnl|mm7|chr16 (13533079-13533332) | |
| 9-251, gnl|Mm7|chr16 (13533160-13533401) | |
| 9-251, gnl|monDom2|scaffold_17 (27829814-27829567) | |
| 9-251, gnl|oryCun1|scaffold_135777 (795-542) | |
| 9-251, gnl|panTro1|chr18 (15802058-15802309) | |
| 9-251, gnl|rheMac2|chr20 (15119402-15119650) | |
| 9-251, gnl|rn3|chr10 (1717244-1717500) | |
| 9-251, gnl|tetNig1|chrUn_random (127438648-127438401) | |
| 252-376, gnl|bosTau2|chr25 (16095440-16095564) | |
| 252-376, gnl|canFam2|chr6 (31321564-31321417) | |
| 252-376, gnl|dasNov1|scaffold_10714 (39940-39793) | |
| 252-376, gnl|echTel1|scaffold_223769 (3298-3451) | |
| 252-376, gnl|fr1|chrUn (249139471-249139610) | |
| 252-376, gnl|hg17|chr16 (15516651-15516798) | |
| 252-376, gnl|Hg17|chr16 (15516663-15516787) | |
| 252-376, gnl|mm7|chr16 (13595882-13596021) | |
| 252-376, gnl|Mm7|chr16 (13595891-13596015) | |
| 252-376, gnl|monDom2|scaffold_17 (27737862-27737715) | |
| 252-376, gnl|oryCun1|scaffold_144472 (15022-15165) | |
| 252-376, gnl|rheMac2|chr20 (15219543-15219690) | |
| 252-376, gnl|rn3|chr10 (72750-72889) | |
| 252-376, gnl|tetNig1|chrUn_random (127437370-127437234) | |
| 252-376, gnl|xenTro1|scaffold_290 (113154-113005) | |
| 431-568, gnl|bosTau2|chr25 (16148088-16148225) | |
| 431-568, gnl|canFam2|chr6 (31276020-31275842) | |
| 431-568, gnl|danRer3|chr23 (13730578-13730432) | |
| 431-568, gnl|fr1|chrUn (249140674-249140843) | |
| 431-568, gnl|galGal2|chr14 (9538298-9538463) | |
| 431-568, gnl|hg17|chr16 (15582544-15582720) | |
| 431-568, gnl|Hg17|chr16 (15582559-15582693) | |
| 431-568, gnl|loxAfr1|scaffold_153847 (499-682) | |
| 431-568, gnl|mm7|chr16 (13640369-13640538) | |
| 431-568, gnl|Mm7|chr16 (13640378-13640515) | |
| 431-568, gnl|monDom2|scaffold_17 (27693230-27693055) | |
| 431-568, gnl|oryCun1|scaffold_197180 (78451-78272) | |
| 431-568, gnl|panTro1|chr18 (15951538-15951715) | |
| 431-568, gnl|rheMac2|chr20 (15284802-15284981) | |
| 431-568, gnl|rn3|chr10 (179741-179898) | |
| 431-568, gnl|tetNig1|chrUn_random (127435882-127435762) | |
| 431-568, gnl|xenTro1|scaffold_290 (76264-76125) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-251, gnl|bosTau2|chr25 (16040787-16041029) | |
| 9-251, gnl|canFam2|chr6 (31385344-31385053) | |
| 9-251, gnl|dasNov1|scaffold_131713 (2670-2916) | |
| 9-251, gnl|echTel1|scaffold_282743 (16812-16558) | |
| 9-251, gnl|hg17|chr16 (15435794-15436045) | |
| 9-251, gnl|Hg17|chr16 (15435872-15436117) | |
| 9-251, gnl|mm7|chr16 (13533079-13533332) | |
| 9-251, gnl|Mm7|chr16 (13533160-13533401) | |
| 9-251, gnl|monDom2|scaffold_17 (27829814-27829567) | |
| 9-251, gnl|oryCun1|scaffold_135777 (795-542) | |
| 9-251, gnl|panTro1|chr18 (15802058-15802309) | |
| 9-251, gnl|rheMac2|chr20 (15119402-15119650) | |
| 9-251, gnl|rn3|chr10 (1717244-1717500) | |
| 9-251, gnl|tetNig1|chrUn_random (127438648-127438401) | |
| 252-376, gnl|bosTau2|chr25 (16095440-16095564) | |
| 252-376, gnl|canFam2|chr6 (31321564-31321417) | |
| 252-376, gnl|dasNov1|scaffold_10714 (39940-39793) | |
| 252-376, gnl|echTel1|scaffold_223769 (3298-3451) | |
| 252-376, gnl|fr1|chrUn (249139471-249139610) | |
| 252-376, gnl|hg17|chr16 (15516651-15516798) | |
| 252-376, gnl|Hg17|chr16 (15516663-15516787) | |
| 252-376, gnl|mm7|chr16 (13595882-13596021) | |
| 252-376, gnl|Mm7|chr16 (13595891-13596015) | |
| 252-376, gnl|monDom2|scaffold_17 (27737862-27737715) | |
| 252-376, gnl|oryCun1|scaffold_144472 (15022-15165) | |
| 252-376, gnl|rheMac2|chr20 (15219543-15219690) | |
| 252-376, gnl|rn3|chr10 (72750-72889) | |
| 252-376, gnl|tetNig1|chrUn_random (127437370-127437234) | |
| 252-376, gnl|xenTro1|scaffold_290 (113154-113005) | |
| 431-568, gnl|bosTau2|chr25 (16148088-16148225) | |
| 431-568, gnl|canFam2|chr6 (31276020-31275842) | |
| 431-568, gnl|danRer3|chr23 (13730578-13730432) | |
| 431-568, gnl|fr1|chrUn (249140674-249140843) | |
| 431-568, gnl|galGal2|chr14 (9538298-9538463) | |
| 431-568, gnl|hg17|chr16 (15582544-15582720) | |
| 431-568, gnl|Hg17|chr16 (15582559-15582693) | |
| 431-568, gnl|loxAfr1|scaffold_153847 (499-682) | |
| 431-568, gnl|mm7|chr16 (13640369-13640538) | |
| 431-568, gnl|Mm7|chr16 (13640378-13640515) | |
| 431-568, gnl|monDom2|scaffold_17 (27693230-27693055) | |
| 431-568, gnl|oryCun1|scaffold_197180 (78451-78272) | |
| 431-568, gnl|panTro1|chr18 (15951538-15951715) | |
| 431-568, gnl|rheMac2|chr20 (15284802-15284981) | |
| 431-568, gnl|rn3|chr10 (179741-179898) | |
| 431-568, gnl|tetNig1|chrUn_random (127435882-127435762) | |
| 431-568, gnl|xenTro1|scaffold_290 (76264-76125) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.236602) | |
| hyp (0.142837) |