Non-Coding RNA Search

Ss1.1-rebs33c_l23.5

Sequence:


               
               GCCCACTCTTTTGTGGCTCCTGGTGTGAAGGCTGCTGTGACGTCTCTGCCCTGTCTGAGG
GATGCTTCGCCATCACTCAGCGTTTCCGTGCTGGAGGTGGGGCCGGGCCACGTCTCCCGC
CATCCCAAGGGGACACATGGGTGCTGTGACTTCCCAGAGAGTGGGTGGACCGTGAGTCTC
CAGGAGAAGCTCCAGGTAGGAAAGAGCCCACATCTGGATCTGGATCCACGGACGAGGACT
GGCCCAGAAGCGGAGTCCCCACGGCTTCACTCAGAGGGCCGGCTGGAAGGGCTGTCGTGA
AATCTTCCCTCCCCGCCAGGCTTTGTCCAGTCCTGACTGGGACCTGGGGGTGGCTCCCTG
GAGAGGTCCAGCCCTGTAGCCAACTTGAGGTGAGCATCATCGAGCAGCCTTTATCTTGGA
GACCCCTGGACAGCCCAGCCCCTCTGTGGAGCCCTTGCACGTCCACAAAGACTGCGTCAG
AGGCCCCGTCCCTTCCTTGCTGTGGTTAGTATCTCGTTCTGTGGTTGGTTAGCAGTGTTG
ATAACCTACATAGTAGATCTTTTTGTCTGAAATTTAGAGAATGTGTAAACAAATAAAAGG
TTTTCAAACTCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACTCTTTTGTGGCTCCTGGTGTGAAGGCTGCTGTGACGTCTCTGCCCTGTCTGAGG
GATGCTTCGCCATCACTCAGCGTTTCCGTGCTGGAGGTGGGGCCGGGCCACGTCTCCCGC
CATCCCAAGGGGACACATGGGTGCTGTGACTTCCCAGAGAGTGGGTGGACCGTGAGTCTC
CAGGAGAAGCTCCAGGTAGGAAAGAGCCCACATCTGGATCTGGATCCACGGACGAGGACT
GGCCCAGAAGCGGAGTCCCCACGGCTTCACTCAGAGGGCCGGCTGGAAGGGCTGTCGTGA
AATCTTCCCTCCCCGCCAGGCTTTGTCCAGTCCTGACTGGGACCTGGGGGTGGCTCCCTG
GAGAGGTCCAGCCCTGTAGCCAACTTGAGGTGAGCATCATCGAGCAGCCTTTATCTTGGA
GACCCCTGGACAGCCCAGCCCCTCTGTGGAGCCCTTGCACGTCCACAAAGACTGCGTCAG
AGGCCCCGTCCCTTCCTTGCTGTGGTTAGTATCTCGTTCTGTGGTTGGTTAGCAGTGTTG
ATAACCTACATAGTAGATCTTTTTGTCTGAAATTTAGAGAATGTGTAAACAAATAAAAGG
TTTTCAAACTCAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               277-387, - strand, RNAz p=0.558086

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-387, - strand, RNAz p=0.558086

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-611, gnl|bosTau2|chr10 (51003217-51002606)
               

               
               2-611, gnl|Hg17|chr14 (72146062-72145495)
               

               
               2-611, gnl|Mm7|chr12 (81202268-81201730)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-611, gnl|bosTau2|chr10 (51003217-51002606)
               

               
               2-611, gnl|Hg17|chr14 (72146062-72145495)
               

               
               2-611, gnl|Mm7|chr12 (81202268-81201730)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ebs (0.118301)

	2-611, gnl\|bosTau2\|chr10 (51003217-51002606)
	2-611, gnl\|Hg17\|chr14 (72146062-72145495)
	2-611, gnl\|Mm7\|chr12 (81202268-81201730)