Non-Coding RNA Search

Ss1.1-rebs34c_a23.5

Sequence:


               
               AAAGGGCCCGTTTTCAGGTTGGAGCTGGGACAGTTTCAAGATTGATGTTCCCTTTTCAGA
CTCCGAAGCTCTCAGAGGAAATTTATGACAGGAATAATTGATGAGGTTTTTGCTGAAGCC
ATAGTGGCAGGAAAGTTGAAAGAGGCGTCAAACCTTTAAGGAAAGCACCTTTTGAGGGAT
TGTTTTCTTTTTTTTCCCCGTAAAGCACTCCTTTAAACAAAAAGAAAACTAAAAATAAAG
CAAGAAGGAACATTGTTACATAAATGAAGGAGAAAGGAGTGCTAGTTAAAAGTACCCCCC
CACCCCCCGCTGTCCTCCTCTTTCCTGCCAAAGCAGAACATGGCCTCACGACTGCCACCG
ACCAGTGCTCATGCCCTCCTGTCTCTGCGCCAGCCTGGGGGTCAGCCAGCTCTCAGGCTA
GGCTCTGCAGGGCCGGTCAGCCCGTGCACACAGCCACAGGCGCAGGTAAGGGCTGCCTCT
GGCAGCTGGGCAGGCACTTGAATTCCAGTGCATTTTTATAAGGTGATGTAGGTGAGGGAA
ATGATTTTTCCCAAGAAACCACTACTTTTTCTTCCCTTCAGGCCTGCCTAGAACTTACAC
AACAATTCATATTTTCAGTGGGGTTTTCCAGCTCTTCTCAGATAAGGAATCAATTAAATC
ATTGATTAATGGGGGAAGATCTGTGGGTACCTAAAATAAAATGATTTCTCCTGGCACATG
TATCAAAGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGGGCCCGTTTTCAGGTTGGAGCTGGGACAGTTTCAAGATTGATGTTCCCTTTTCAGA
CTCCGAAGCTCTCAGAGGAAATTTATGACAGGAATAATTGATGAGGTTTTTGCTGAAGCC
ATAGTGGCAGGAAAGTTGAAAGAGGCGTCAAACCTTTAAGGAAAGCACCTTTTGAGGGAT
TGTTTTCTTTTTTTTCCCCGTAAAGCACTCCTTTAAACAAAAAGAAAACTAAAAATAAAG
CAAGAAGGAACATTGTTACATAAATGAAGGAGAAAGGAGTGCTAGTTAAAAGTACCCCCC
CACCCCCCGCTGTCCTCCTCTTTCCTGCCAAAGCAGAACATGGCCTCACGACTGCCACCG
ACCAGTGCTCATGCCCTCCTGTCTCTGCGCCAGCCTGGGGGTCAGCCAGCTCTCAGGCTA
GGCTCTGCAGGGCCGGTCAGCCCGTGCACACAGCCACAGGCGCAGGTAAGGGCTGCCTCT
GGCAGCTGGGCAGGCACTTGAATTCCAGTGCATTTTTATAAGGTGATGTAGGTGAGGGAA
ATGATTTTTCCCAAGAAACCACTACTTTTTCTTCCCTTCAGGCCTGCCTAGAACTTACAC
AACAATTCATATTTTCAGTGGGGTTTTCCAGCTCTTCTCAGATAAGGAATCAATTAAATC
ATTGATTAATGGGGGAAGATCTGTGGGTACCTAAAATAAAATGATTTCTCCTGGCACATG
TATCAAAGCAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               244-339, - strand, RNAz p=0.541914
               

               
               324-477, + strand, RNAz p=0.999913
               

               
               477-630, - strand, RNAz p=0.984677

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               244-339, - strand, RNAz p=0.541914
               

               
               324-477, + strand, RNAz p=0.999913
               

               
               477-630, - strand, RNAz p=0.984677

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               405-494, + strand, RNAmicro p=0.940921

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               405-494, + strand, RNAmicro p=0.940921

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB017133, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB017133, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               4-732, gnl|bosTau2|chr16 (31814369-31815081)
               

               
               4-732, gnl|canFam2|chr5 (66512162-66513074)
               

               
               4-732, gnl|echTel1|scaffold_289476 (2925-3700)
               

               
               4-732, gnl|galGal2|chr21 (3571027-3571946)
               

               
               4-732, gnl|hg17|chr1 (10373436-10374267)
               

               
               4-732, gnl|Hg17|chr1 (10373741-10374471)
               

               
               4-732, gnl|mm7|chr4 (148168117-148167260)
               

               
               4-732, gnl|Mm7|chr4 (148167795-148167067)
               

               
               4-732, gnl|monDom2|scaffold_177 (298460-297590)
               

               
               4-732, gnl|oryCun1|scaffold_199608 (40951-40189)
               

               
               4-732, gnl|panTro1|chr1 (10568695-10569526)
               

               
               4-732, gnl|rheMac2|chr1 (13476250-13477088)
               

               
               4-732, gnl|rn3|chr5 (166258604-166257821)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-732, gnl|bosTau2|chr16 (31814369-31815081)
               

               
               4-732, gnl|canFam2|chr5 (66512162-66513074)
               

               
               4-732, gnl|echTel1|scaffold_289476 (2925-3700)
               

               
               4-732, gnl|galGal2|chr21 (3571027-3571946)
               

               
               4-732, gnl|hg17|chr1 (10373436-10374267)
               

               
               4-732, gnl|Hg17|chr1 (10373741-10374471)
               

               
               4-732, gnl|mm7|chr4 (148168117-148167260)
               

               
               4-732, gnl|Mm7|chr4 (148167795-148167067)
               

               
               4-732, gnl|monDom2|scaffold_177 (298460-297590)
               

               
               4-732, gnl|oryCun1|scaffold_199608 (40951-40189)
               

               
               4-732, gnl|panTro1|chr1 (10568695-10569526)
               

               
               4-732, gnl|rheMac2|chr1 (13476250-13477088)
               

               
               4-732, gnl|rn3|chr5 (166258604-166257821)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               ecc (0.115035)

	244-339, - strand, RNAz p=0.541914
	324-477, + strand, RNAz p=0.999913
	477-630, - strand, RNAz p=0.984677

	4-732, gnl\|bosTau2\|chr16 (31814369-31815081)
	4-732, gnl\|canFam2\|chr5 (66512162-66513074)
	4-732, gnl\|echTel1\|scaffold_289476 (2925-3700)
	4-732, gnl\|galGal2\|chr21 (3571027-3571946)
	4-732, gnl\|hg17\|chr1 (10373436-10374267)
	4-732, gnl\|Hg17\|chr1 (10373741-10374471)
	4-732, gnl\|mm7\|chr4 (148168117-148167260)
	4-732, gnl\|Mm7\|chr4 (148167795-148167067)
	4-732, gnl\|monDom2\|scaffold_177 (298460-297590)
	4-732, gnl\|oryCun1\|scaffold_199608 (40951-40189)
	4-732, gnl\|panTro1\|chr1 (10568695-10569526)
	4-732, gnl\|rheMac2\|chr1 (13476250-13477088)
	4-732, gnl\|rn3\|chr5 (166258604-166257821)