Non-Coding RNA Search

Ss1.1-rebs34c_d10.5

Sequence:


               
               ATAGCTGGAGGGCTGGGGGCGGGGTGTCTACATCCGCTGAGAGGCAGGGGCCACGCAGCG
GGAGGAAGGGCTCTGAGCCCAGGAGAGGGGAGGGGCGGAGGGGCGCAACCACTGGGGTTG
TGTCTTGCCTCCAGGGGGCGCTGTCTCCCCCCTTCAGATGCCTTTGCTCAATGTTCGGGG
TTTCTTTGGTGGTAGCATCCCGGCCAGCTCCTGGGAGTCCCTCAAGCCTCAAGGGTAGGT
TTTTACCTACCTACTGTGGATGGATGGGGGGATGCCCACCTTTCTGCAGTGTCCCCTTCC
CCACCTCAGGGGGCTCTCTCCCCTCACCCAGAGAAAAGGTGCACTTCCTGAACTACCCCG
GGCTCCAAATGAGGTGGCCCTTTCTTTTTCCAATCTGGAGTATTTGGGAAGGGTATGGGG
GCTTTTCCTGGAGAAGGGAGACCACAAACTCTTTCTCATGAGGGCTCTCTTCCCTAAACC
CCAGATCCAGGGTCCCTCACGGTGCCCCCCCCCCCCCGCTTCCTGGCAGCATTATCTGGG
AGGTGAAAGCCACAGCATTGAAGCTATCTGCGGAGCTTGTCCTGGGCAGTGGTTTGGAGA
GAAGCTGGCAGGCATCTGATGTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGCTGGAGGGCTGGGGGCGGGGTGTCTACATCCGCTGAGAGGCAGGGGCCACGCAGCG
GGAGGAAGGGCTCTGAGCCCAGGAGAGGGGAGGGGCGGAGGGGCGCAACCACTGGGGTTG
TGTCTTGCCTCCAGGGGGCGCTGTCTCCCCCCTTCAGATGCCTTTGCTCAATGTTCGGGG
TTTCTTTGGTGGTAGCATCCCGGCCAGCTCCTGGGAGTCCCTCAAGCCTCAAGGGTAGGT
TTTTACCTACCTACTGTGGATGGATGGGGGGATGCCCACCTTTCTGCAGTGTCCCCTTCC
CCACCTCAGGGGGCTCTCTCCCCTCACCCAGAGAAAAGGTGCACTTCCTGAACTACCCCG
GGCTCCAAATGAGGTGGCCCTTTCTTTTTCCAATCTGGAGTATTTGGGAAGGGTATGGGG
GCTTTTCCTGGAGAAGGGAGACCACAAACTCTTTCTCATGAGGGCTCTCTTCCCTAAACC
CCAGATCCAGGGTCCCTCACGGTGCCCCCCCCCCCCCGCTTCCTGGCAGCATTATCTGGG
AGGTGAAAGCCACAGCATTGAAGCTATCTGCGGAGCTTGTCCTGGGCAGTGGTTTGGAGA
GAAGCTGGCAGGCATCTGATGTAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               196-480, + strand, RNAz p=0.998512

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-480, + strand, RNAz p=0.998512

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_000723, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000723, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-624, gnl|bosTau2|chr19 (34791031-34791680)
               

               
               3-624, gnl|Hg17|chr17 (34585009-34584374)
               

               
               3-624, gnl|Mm7|chr11 (98111977-98111362)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-624, gnl|bosTau2|chr19 (34791031-34791680)
               

               
               3-624, gnl|Hg17|chr17 (34585009-34584374)
               

               
               3-624, gnl|Mm7|chr11 (98111977-98111362)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.236602)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)

	3-624, gnl\|bosTau2\|chr19 (34791031-34791680)
	3-624, gnl\|Hg17\|chr17 (34585009-34584374)
	3-624, gnl\|Mm7\|chr11 (98111977-98111362)