Non-Coding RNA Search

Ss1.1-rebs34c_i16.5

Sequence:


               
               GGCTGGCCCCGCGCGGGAACCCGCGGAGGCGCGGACGAGACCCGGCAGGTCCCGGGAGGA
AGGGGCGCGGAGGGGGGGGCTCTTCCCGGCCCCTTCAAGCAAGCGGCGGAGGAGCGCGGA
GACTCGGCAGGCCAGGCCAGACCGTCAGGGGGGTCCCCGCGGAGCCGCGGCCCGCGTGAC
CAGAGCCGCCCACGCCGACCCCAGCTGACTGAGGCCCCCGCTGACTGGGGTCATATCTCC
ACGCTGACCGGCGCCGACCAGGGCCGCCGCCCCGCTGCCCCTGCCGCTCAGGTAGTTCCC
CCCGCTCAGCCTGGCTCCCCCAGGAACAGGAGGCACCTGGGCGGAGGCCGGAGATGGCAT
CCGTGGACTTCAAGACCTACGTGGACCAGGCCTGCCGCGCAGCCGAGGAGTTTGTGAACG
TGTACTACAGCACCATGGACAAGCGGCGGAGGTTGCTGTCCCGCCTGTACACAGGCACTG
CCACCCTGGTGTGGAACGGCAATGCCGTTTCGGGACAAGAATCCTTGAGTGAGTTTTTTG
AGATGTTGCCTTCCAGCGAGTTCCAGATCAACGTGGTAGACTGCCAGCCTGTCCACGACG
ACGCCACACCGAGCCAGACCACTGTCCTCGTGGTCATCTGTGGGACGGTGAAGTTTGAGG
GCAACAAGCAGCGGGACTTCAACCAGAACTTCATCCACGGCCCAGGCCCCTCACCCAGCA
GCAGTATGGAAGATCGCCAGTGATTGCTTCCGCTTCCAGGACTGGGCCTGCTAGGGCGCT
GGGAGCCCACCTGAGGCCAAGGGCCCTCCTGGGCACATGCTTGTTTGTCATAGCTGCCTT
TTCAAAGTAGTGAAATTCTCTATTTTTCTACTTGCCCAGTGGAGACCCTGGTTCTGGAAA
CTCTGATGATTAAAAAAATAATACGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGGCCCCGCGCGGGAACCCGCGGAGGCGCGGACGAGACCCGGCAGGTCCCGGGAGGA
AGGGGCGCGGAGGGGGGGGCTCTTCCCGGCCCCTTCAAGCAAGCGGCGGAGGAGCGCGGA
GACTCGGCAGGCCAGGCCAGACCGTCAGGGGGGTCCCCGCGGAGCCGCGGCCCGCGTGAC
CAGAGCCGCCCACGCCGACCCCAGCTGACTGAGGCCCCCGCTGACTGGGGTCATATCTCC
ACGCTGACCGGCGCCGACCAGGGCCGCCGCCCCGCTGCCCCTGCCGCTCAGGTAGTTCCC
CCCGCTCAGCCTGGCTCCCCCAGGAACAGGAGGCACCTGGGCGGAGGCCGGAGATGGCAT
CCGTGGACTTCAAGACCTACGTGGACCAGGCCTGCCGCGCAGCCGAGGAGTTTGTGAACG
TGTACTACAGCACCATGGACAAGCGGCGGAGGTTGCTGTCCCGCCTGTACACAGGCACTG
CCACCCTGGTGTGGAACGGCAATGCCGTTTCGGGACAAGAATCCTTGAGTGAGTTTTTTG
AGATGTTGCCTTCCAGCGAGTTCCAGATCAACGTGGTAGACTGCCAGCCTGTCCACGACG
ACGCCACACCGAGCCAGACCACTGTCCTCGTGGTCATCTGTGGGACGGTGAAGTTTGAGG
GCAACAAGCAGCGGGACTTCAACCAGAACTTCATCCACGGCCCAGGCCCCTCACCCAGCA
GCAGTATGGAAGATCGCCAGTGATTGCTTCCGCTTCCAGGACTGGGCCTGCTAGGGCGCT
GGGAGCCCACCTGAGGCCAAGGGCCCTCCTGGGCACATGCTTGTTTGTCATAGCTGCCTT
TTCAAAGTAGTGAAATTCTCTATTTTTCTACTTGCCCAGTGGAGACCCTGGTTCTGGAAA
CTCTGATGATTAAAAAAATAATACGAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|23270994|gb|AAH23672.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|23270994|gb|AAH23672.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               801-915, + strand, RNAz p=0.635443

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               801-915, + strand, RNAz p=0.635443

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_013248, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_013248, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               336-791, gnl|bosTau2|chr13 (27628578-27629034)
               

               
               336-791, gnl|Hg17|chr20 (23282662-23283135)
               

               
               336-791, gnl|Mm7|chr2 (148416180-148416638)
               


               
               801-915, gnl|bosTau2|chr13 (27629070-27629185)
               

               
               801-915, gnl|Hg17|chr20 (23283269-23283397)
               

               
               801-915, gnl|Mm7|chr2 (148416755-148416868)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               336-791, gnl|bosTau2|chr13 (27628578-27629034)
               

               
               336-791, gnl|Hg17|chr20 (23282662-23283135)
               

               
               336-791, gnl|Mm7|chr2 (148416180-148416638)
               


               
               801-915, gnl|bosTau2|chr13 (27629070-27629185)
               

               
               801-915, gnl|Hg17|chr20 (23283269-23283397)
               

               
               801-915, gnl|Mm7|chr2 (148416755-148416868)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ebs (0.236602)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	336-791, gnl\|bosTau2\|chr13 (27628578-27629034)
	336-791, gnl\|Hg17\|chr20 (23282662-23283135)
	336-791, gnl\|Mm7\|chr2 (148416180-148416638)

	801-915, gnl\|bosTau2\|chr13 (27629070-27629185)
	801-915, gnl\|Hg17\|chr20 (23283269-23283397)
	801-915, gnl\|Mm7\|chr2 (148416755-148416868)

	ebs (0.236602)
	sag (0.182715)
	rec (0.17307)
	hyp (0.142837)
	cst (0.140036)
	pgl (0.118483)
	jej (0.0989218)