Ss1.1-rebs34c_j12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGACTACGACATCTTGAGGAAGGAGAAATTCCACCCCCTGATCCCCGCGCACACCTTCAC CAACATCAGCACCAAGAATCCTCAAGGCTCGAAGACGCTGGACAACATCTGGATCAGTAA AAGCTTAAAGAAGGTTTTCACAGGTCACTGGGCTGTCGTGAGAGAAGGCCTCACGAACCC TTGGATTCCAGACAACTGGTCCTGGGGCGGAGTGGCTTCGGAACACTGCCCCGTGCTCGC CGAGTTTTACACGGAGAAGGACGGGAGCAGGAAGGAGGGCCCTCGGAACAGCAGCGGGGT CACCCTAGAGCCAAGTGAGGCCAACATTAAGCACGAGCGATGATGACGCCAAGTCGGTTT TCCACCCGCAACCCCGGAGGCGAGGAGCTCGCCCTCCGGGTGAAGATGCAGAGCCCGAGC TCCGGCCTCAGCCCCGGCCTCGCCCGCCTGCGCCCTGTGTGGACCTCTCTGGACTCTCAA GGAAGGAGCCCGTCCGGCCCTCGAGGAGCCGGATGCTCACATCAGAAGCCCAGGGGAGAC CCGGAATATCTTCTCTCTGCCGATGCCGCCAACCGGGGTGCCCCCGGCGGCCCCCCCGCT CCTGGACGGCAGCGCCGTTGGAGGCTCAAGGCGGAGAGAGACGCTCCGCCAGCAGGACCT GCCCGGCAGTGCCCGGAGCCCTCGTTTCTGACCACCCGTCTGCGATGTTCCGGCTGCAAA TTCCATACAGCTTTTAACTTGAGCACGCTCCTCAGATATTTTGAGTGGTGATTTTTAGTT TTGTTTGGAACAAAATAAACAAGAGATGAACCTAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGACTACGACATCTTGAGGAAGGAGAAATTCCACCCCCTGATCCCCGCGCACACCTTCAC CAACATCAGCACCAAGAATCCTCAAGGCTCGAAGACGCTGGACAACATCTGGATCAGTAA AAGCTTAAAGAAGGTTTTCACAGGTCACTGGGCTGTCGTGAGAGAAGGCCTCACGAACCC TTGGATTCCAGACAACTGGTCCTGGGGCGGAGTGGCTTCGGAACACTGCCCCGTGCTCGC CGAGTTTTACACGGAGAAGGACGGGAGCAGGAAGGAGGGCCCTCGGAACAGCAGCGGGGT CACCCTAGAGCCAAGTGAGGCCAACATTAAGCACGAGCGATGATGACGCCAAGTCGGTTT TCCACCCGCAACCCCGGAGGCGAGGAGCTCGCCCTCCGGGTGAAGATGCAGAGCCCGAGC TCCGGCCTCAGCCCCGGCCTCGCCCGCCTGCGCCCTGTGTGGACCTCTCTGGACTCTCAA GGAAGGAGCCCGTCCGGCCCTCGAGGAGCCGGATGCTCACATCAGAAGCCCAGGGGAGAC CCGGAATATCTTCTCTCTGCCGATGCCGCCAACCGGGGTGCCCCCGGCGGCCCCCCCGCT CCTGGACGGCAGCGCCGTTGGAGGCTCAAGGCGGAGAGAGACGCTCCGCCAGCAGGACCT GCCCGGCAGTGCCCGGAGCCCTCGTTTCTGACCACCCGTCTGCGATGTTCCGGCTGCAAA TTCCATACAGCTTTTAACTTGAGCACGCTCCTCAGATATTTTGAGTGGTGATTTTTAGTT TTGTTTGGAACAAAATAAACAAGAGATGAACCTAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 141-259, + strand, RNAz p=0.605839 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 141-259, + strand, RNAz p=0.605839 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 141-418, gnl|bosTau2|chr4 (34158459-34158732) | |
| 141-418, gnl|canFam2|chr14 (50682375-50682602) | |
| 141-418, gnl|danRer3|chr25 (18173507-18173289) | |
| 141-418, gnl|dasNov1|scaffold_3359 (96287-96513) | |
| 141-418, gnl|echTel1|scaffold_208303 (3282-3505) | |
| 141-418, gnl|galGal2|chr2 (45889583-45889355) | |
| 141-418, gnl|hg17|chr7 (36111833-36112060) | |
| 141-418, gnl|Hg17|chr7 (36111853-36112139) | |
| 141-418, gnl|loxAfr1|scaffold_22303 (32876-33101) | |
| 141-418, gnl|mm7|chr9 (25486375-25486596) | |
| 141-418, gnl|Mm7|chr9 (25486389-25486657) | |
| 141-418, gnl|oryCun1|scaffold_196211 (16174-15952) | |
| 141-418, gnl|panTro1|chr6 (37277638-37277865) | |
| 141-418, gnl|rheMac2|chr3 (89929821-89929594) | |
| 141-418, gnl|rn3|chr8 (25285532-25285753) | |
| 141-418, gnl|tetNig1|chrUn_random (10412414-10412197) | |
| 141-418, gnl|xenTro1|scaffold_219 (830375-830589) | |
| 676-813, gnl|bosTau2|chr4 (34158991-34159128) | |
| 676-813, gnl|canFam2|chr14 (50682876-50683101) | |
| 676-813, gnl|echTel1|scaffold_208303 (3789-4063) | |
| 676-813, gnl|hg17|chr7 (36112354-36112612) | |
| 676-813, gnl|Hg17|chr7 (36112427-36112572) | |
| 676-813, gnl|loxAfr1|scaffold_22303 (33401-33680) | |
| 676-813, gnl|mm7|chr9 (25486872-25487113) | |
| 676-813, gnl|Mm7|chr9 (25486940-25487082) | |
| 676-813, gnl|oryCun1|scaffold_196211 (15677-15442) | |
| 676-813, gnl|panTro1|chr6 (37278159-37278417) | |
| 676-813, gnl|rheMac2|chr3 (89929298-89929038) | |
| 676-813, gnl|rn3|chr8 (25286030-25286271) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 141-418, gnl|bosTau2|chr4 (34158459-34158732) | |
| 141-418, gnl|canFam2|chr14 (50682375-50682602) | |
| 141-418, gnl|danRer3|chr25 (18173507-18173289) | |
| 141-418, gnl|dasNov1|scaffold_3359 (96287-96513) | |
| 141-418, gnl|echTel1|scaffold_208303 (3282-3505) | |
| 141-418, gnl|galGal2|chr2 (45889583-45889355) | |
| 141-418, gnl|hg17|chr7 (36111833-36112060) | |
| 141-418, gnl|Hg17|chr7 (36111853-36112139) | |
| 141-418, gnl|loxAfr1|scaffold_22303 (32876-33101) | |
| 141-418, gnl|mm7|chr9 (25486375-25486596) | |
| 141-418, gnl|Mm7|chr9 (25486389-25486657) | |
| 141-418, gnl|oryCun1|scaffold_196211 (16174-15952) | |
| 141-418, gnl|panTro1|chr6 (37277638-37277865) | |
| 141-418, gnl|rheMac2|chr3 (89929821-89929594) | |
| 141-418, gnl|rn3|chr8 (25285532-25285753) | |
| 141-418, gnl|tetNig1|chrUn_random (10412414-10412197) | |
| 141-418, gnl|xenTro1|scaffold_219 (830375-830589) | |
| 676-813, gnl|bosTau2|chr4 (34158991-34159128) | |
| 676-813, gnl|canFam2|chr14 (50682876-50683101) | |
| 676-813, gnl|echTel1|scaffold_208303 (3789-4063) | |
| 676-813, gnl|hg17|chr7 (36112354-36112612) | |
| 676-813, gnl|Hg17|chr7 (36112427-36112572) | |
| 676-813, gnl|loxAfr1|scaffold_22303 (33401-33680) | |
| 676-813, gnl|mm7|chr9 (25486872-25487113) | |
| 676-813, gnl|Mm7|chr9 (25486940-25487082) | |
| 676-813, gnl|oryCun1|scaffold_196211 (15677-15442) | |
| 676-813, gnl|panTro1|chr6 (37278159-37278417) | |
| 676-813, gnl|rheMac2|chr3 (89929298-89929038) | |
| 676-813, gnl|rn3|chr8 (25286030-25286271) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ece (0.45861) | |
| cag (0.151194) | |
| eru (0.120048) | |
| ebs (0.118301) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| cag (0.151194) | |
| eru (0.120048) | |
| ebs (0.118301) |