Ss1.1-rebs34c_j9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCGAGGGGACACAGCGCAGGGTTCCGGACCATGTGGGCTCTCTGTATCCACGGTCTCC ATATTATCTTTGGTAAAAAAATTTCAGTGGTGCAAGTTCTAGATTTCTGACCATGCGATA GAACCTTCTGGATCCTTTTGCTGACTCTGATGTTTTCTGCCCAGTATGGCCAGGGGACTG TAGAGGTGGCGATTTAGAACAAGCACCTGGAGCCTCTAGCTGCTTGCTGAGGAGACAGTT GGAGCGCAAGGATGGCAGGTGTGCCTTGAGAGCCTAGAGAGTGAAAGGTGCAGACTCTGG ATTTGGGCGCGTGTATCTGCCGGGTTCCCGGGAGTGGAACCGTGCAACTGGGAAGCCTCC CTTCGGAATTTCTGTCAGTTTCCTCATCAAAAGTGGACAAGCCCAGTCAGGACTCTCTGC CTTGTGGGTTGAGCCAGAGATCCCCGGAAAGGAGCCCCGAAATCGTCATGCTCCAGCGGC TCCTGATTTCCTTGCCCGCCGAGACCAGCTCCTGGGTGAAGTTGCACCATCCAGAGAAGG CCCCGGAGGGCGCGCCCCTGTGGGAGGACGTGCCTGAGATGTCGGAAGGAGAAGCTCTGC TATCTCGGGGTGCTGATGAGACCCAGGGAGAAAGCTTTGAGGAAGAAGCAACATCTGGGT CCCTGGCAGAAGAATCCCAGGAGCAGTTGACCTTCAGGGACGTATCCGTGGAACTTCACC CAGGAGGAGTGGGGGCAGCTGGCCCCTGCTCACCGGCACCTGTACCGGGAGGTGATGCTG GAGAACTACGGGAACCTGGTCTCCGTGGGTAAGGATGGGCTCCCCTTGTAACTAGCATCT GCCTATTGGAATAAAAATCTGTATTTCTAAGTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCGAGGGGACACAGCGCAGGGTTCCGGACCATGTGGGCTCTCTGTATCCACGGTCTCC ATATTATCTTTGGTAAAAAAATTTCAGTGGTGCAAGTTCTAGATTTCTGACCATGCGATA GAACCTTCTGGATCCTTTTGCTGACTCTGATGTTTTCTGCCCAGTATGGCCAGGGGACTG TAGAGGTGGCGATTTAGAACAAGCACCTGGAGCCTCTAGCTGCTTGCTGAGGAGACAGTT GGAGCGCAAGGATGGCAGGTGTGCCTTGAGAGCCTAGAGAGTGAAAGGTGCAGACTCTGG ATTTGGGCGCGTGTATCTGCCGGGTTCCCGGGAGTGGAACCGTGCAACTGGGAAGCCTCC CTTCGGAATTTCTGTCAGTTTCCTCATCAAAAGTGGACAAGCCCAGTCAGGACTCTCTGC CTTGTGGGTTGAGCCAGAGATCCCCGGAAAGGAGCCCCGAAATCGTCATGCTCCAGCGGC TCCTGATTTCCTTGCCCGCCGAGACCAGCTCCTGGGTGAAGTTGCACCATCCAGAGAAGG CCCCGGAGGGCGCGCCCCTGTGGGAGGACGTGCCTGAGATGTCGGAAGGAGAAGCTCTGC TATCTCGGGGTGCTGATGAGACCCAGGGAGAAAGCTTTGAGGAAGAAGCAACATCTGGGT CCCTGGCAGAAGAATCCCAGGAGCAGTTGACCTTCAGGGACGTATCCGTGGAACTTCACC CAGGAGGAGTGGGGGCAGCTGGCCCCTGCTCACCGGCACCTGTACCGGGAGGTGATGCTG GAGAACTACGGGAACCTGGTCTCCGTGGGTAAGGATGGGCTCCCCTTGTAACTAGCATCT GCCTATTGGAATAAAAATCTGTATTTCTAAGTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 186-296, - strand, RNAz p=0.612793 | |
| 344-461, - strand, RNAz p=0.871381 | |
| 716-815, - strand, RNAz p=0.902159 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 186-296, - strand, RNAz p=0.612793 | |
| 344-461, - strand, RNAz p=0.871381 | |
| 716-815, - strand, RNAz p=0.902159 |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 18-169, gnl|bosTau2|chr3 (68013389-68013537) | |
| 18-169, gnl|Hg17|chr1 (40585273-40585432) | |
| 186-594, gnl|bosTau2|chr3 (68013534-68013947) | |
| 186-594, gnl|Hg17|chr1 (40585422-40585853) | |
| 667-818, gnl|bosTau2|chr28 (7735910-7736058) | |
| 667-818, gnl|Hg17|chr10 (38345811-38345959) | |
| 667-818, gnl|Mm7|chr5 (142209531-142209389) | |
| 677-815, gnl|bosTau2|chr10 (9012863-9012726) | |
| 677-815, gnl|canFam2|chr24 (21662663-21662500) | |
| 677-815, gnl|dasNov1|scaffold_26600 (41328-41182) | |
| 677-815, gnl|echTel1|scaffold_299251 (17383-17545) | |
| 677-815, gnl|galGal2|chrUn (125533105-125533263) | |
| 677-815, gnl|Hg17|chr2 (95265098-95265235) | |
| 677-815, gnl|hg17|chr20 (2421340-2421503) | |
| 677-815, gnl|loxAfr1|scaffold_6431 (37494-37332) | |
| 677-815, gnl|Mm7|chr2 (127321880-127321705) | |
| 677-815, gnl|mm7|chr4 (146500427-146500290) | |
| 677-815, gnl|monDom2|scaffold_43 (17867834-17867983) | |
| 677-815, gnl|oryCun1|scaffold_172922 (10291-10448) | |
| 677-815, gnl|panTro1|chr21_random (4040026-4039863) | |
| 677-815, gnl|rheMac2|chr10 (35802098-35802261) | |
| 677-815, gnl|rn3|chr1 (85178363-85178498) | |
| 677-815, gnl|xenTro1|scaffold_106 (267371-267217) | |
| 678-813, gnl|bosTau2|chr10 (9028012-9028146) | |
| 678-813, gnl|canFam2|chr13 (41173866-41173720) | |
| 678-813, gnl|canFam2|chr17 (38021163-38021010) | |
| 678-813, gnl|canFam2|chr5 (42207268-42207411) | |
| 678-813, gnl|dasNov1|scaffold_56625 (6765-6916) | |
| 678-813, gnl|dasNov1|scaffold_61491 (892-738) | |
| 678-813, gnl|dasNov1|scaffold_7623 (14333-14479) | |
| 678-813, gnl|echTel1|scaffold_293865 (37284-37176) | |
| 678-813, gnl|echTel1|scaffold_29775 (2075-1936) | |
| 678-813, gnl|echTel1|scaffold_312536 (80320-80163) | |
| 678-813, gnl|fr1|chrUn (307423493-307423637) | |
| 678-813, gnl|galGal2|chr2 (106181-106339) | |
| 678-813, gnl|galGal2|chrUn (148467078-148467228) | |
| 678-813, gnl|hg17|chr17 (15521610-15521755) | |
| 678-813, gnl|hg17|chr2 (95240744-95240898) | |
| 678-813, gnl|Hg17|chr2 (95240881-95240747) | |
| 678-813, gnl|hg17|chr8 (145962995-145963132) | |
| 678-813, gnl|loxAfr1|scaffold_13772 (22431-22286) | |
| 678-813, gnl|loxAfr1|scaffold_14553 (77423-77251) | |
| 678-813, gnl|loxAfr1|scaffold_22933 (32548-32409) | |
| 678-813, gnl|mm7|chr15 (76952962-76952805) | |
| 678-813, gnl|mm7|chr17 (19196527-19196390) | |
| 678-813, gnl|mm7|chr7 (37886131-37885976) | |
| 678-813, gnl|Mm7|chr8 (105017923-105018057) | |
| 678-813, gnl|monDom2|scaffold_1 (66465215-66465367) | |
| 678-813, gnl|monDom2|scaffold_38 (23189887-23190041) | |
| 678-813, gnl|oryCun1|scaffold_109597 (3663-3520) | |
| 678-813, gnl|oryCun1|scaffold_128204 (5511-5342) | |
| 678-813, gnl|oryCun1|scaffold_201253 (40291-40434) | |
| 678-813, gnl|panTro1|chr12 (98225290-98225444) | |
| 678-813, gnl|panTro1|chr19_random (22761710-22761565) | |
| 678-813, gnl|panTro1|chr7 (149223426-149223563) | |
| 678-813, gnl|rheMac2|chr13 (96244738-96244890) | |
| 678-813, gnl|rheMac2|chr16 (15392699-15392845) | |
| 678-813, gnl|rheMac2|chr8 (147411239-147411378) | |
| 678-813, gnl|rn3|chr1 (60066348-60066485) | |
| 678-813, gnl|rn3|chr19 (23240672-23240801) | |
| 678-813, gnl|rn3|chr7 (114959872-114959715) | |
| 678-813, gnl|xenTro1|scaffold_1044 (41369-41520) | |
| 678-813, gnl|xenTro1|scaffold_2065 (34948-34800) | |
| 678-813, gnl|xenTro1|scaffold_4246 (5246-5109) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-169, gnl|bosTau2|chr3 (68013389-68013537) | |
| 18-169, gnl|Hg17|chr1 (40585273-40585432) | |
| 186-594, gnl|bosTau2|chr3 (68013534-68013947) | |
| 186-594, gnl|Hg17|chr1 (40585422-40585853) | |
| 667-818, gnl|bosTau2|chr28 (7735910-7736058) | |
| 667-818, gnl|Hg17|chr10 (38345811-38345959) | |
| 667-818, gnl|Mm7|chr5 (142209531-142209389) | |
| 677-815, gnl|bosTau2|chr10 (9012863-9012726) | |
| 677-815, gnl|canFam2|chr24 (21662663-21662500) | |
| 677-815, gnl|dasNov1|scaffold_26600 (41328-41182) | |
| 677-815, gnl|echTel1|scaffold_299251 (17383-17545) | |
| 677-815, gnl|galGal2|chrUn (125533105-125533263) | |
| 677-815, gnl|Hg17|chr2 (95265098-95265235) | |
| 677-815, gnl|hg17|chr20 (2421340-2421503) | |
| 677-815, gnl|loxAfr1|scaffold_6431 (37494-37332) | |
| 677-815, gnl|Mm7|chr2 (127321880-127321705) | |
| 677-815, gnl|mm7|chr4 (146500427-146500290) | |
| 677-815, gnl|monDom2|scaffold_43 (17867834-17867983) | |
| 677-815, gnl|oryCun1|scaffold_172922 (10291-10448) | |
| 677-815, gnl|panTro1|chr21_random (4040026-4039863) | |
| 677-815, gnl|rheMac2|chr10 (35802098-35802261) | |
| 677-815, gnl|rn3|chr1 (85178363-85178498) | |
| 677-815, gnl|xenTro1|scaffold_106 (267371-267217) | |
| 678-813, gnl|bosTau2|chr10 (9028012-9028146) | |
| 678-813, gnl|canFam2|chr13 (41173866-41173720) | |
| 678-813, gnl|canFam2|chr17 (38021163-38021010) | |
| 678-813, gnl|canFam2|chr5 (42207268-42207411) | |
| 678-813, gnl|dasNov1|scaffold_56625 (6765-6916) | |
| 678-813, gnl|dasNov1|scaffold_61491 (892-738) | |
| 678-813, gnl|dasNov1|scaffold_7623 (14333-14479) | |
| 678-813, gnl|echTel1|scaffold_293865 (37284-37176) | |
| 678-813, gnl|echTel1|scaffold_29775 (2075-1936) | |
| 678-813, gnl|echTel1|scaffold_312536 (80320-80163) | |
| 678-813, gnl|fr1|chrUn (307423493-307423637) | |
| 678-813, gnl|galGal2|chr2 (106181-106339) | |
| 678-813, gnl|galGal2|chrUn (148467078-148467228) | |
| 678-813, gnl|hg17|chr17 (15521610-15521755) | |
| 678-813, gnl|hg17|chr2 (95240744-95240898) | |
| 678-813, gnl|Hg17|chr2 (95240881-95240747) | |
| 678-813, gnl|hg17|chr8 (145962995-145963132) | |
| 678-813, gnl|loxAfr1|scaffold_13772 (22431-22286) | |
| 678-813, gnl|loxAfr1|scaffold_14553 (77423-77251) | |
| 678-813, gnl|loxAfr1|scaffold_22933 (32548-32409) | |
| 678-813, gnl|mm7|chr15 (76952962-76952805) | |
| 678-813, gnl|mm7|chr17 (19196527-19196390) | |
| 678-813, gnl|mm7|chr7 (37886131-37885976) | |
| 678-813, gnl|Mm7|chr8 (105017923-105018057) | |
| 678-813, gnl|monDom2|scaffold_1 (66465215-66465367) | |
| 678-813, gnl|monDom2|scaffold_38 (23189887-23190041) | |
| 678-813, gnl|oryCun1|scaffold_109597 (3663-3520) | |
| 678-813, gnl|oryCun1|scaffold_128204 (5511-5342) | |
| 678-813, gnl|oryCun1|scaffold_201253 (40291-40434) | |
| 678-813, gnl|panTro1|chr12 (98225290-98225444) | |
| 678-813, gnl|panTro1|chr19_random (22761710-22761565) | |
| 678-813, gnl|panTro1|chr7 (149223426-149223563) | |
| 678-813, gnl|rheMac2|chr13 (96244738-96244890) | |
| 678-813, gnl|rheMac2|chr16 (15392699-15392845) | |
| 678-813, gnl|rheMac2|chr8 (147411239-147411378) | |
| 678-813, gnl|rn3|chr1 (60066348-60066485) | |
| 678-813, gnl|rn3|chr19 (23240672-23240801) | |
| 678-813, gnl|rn3|chr7 (114959872-114959715) | |
| 678-813, gnl|xenTro1|scaffold_1044 (41369-41520) | |
| 678-813, gnl|xenTro1|scaffold_2065 (34948-34800) | |
| 678-813, gnl|xenTro1|scaffold_4246 (5246-5109) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.142837) | |
| che (0.136314) | |
| ebs (0.118301) |