Non-Coding RNA Search

Ss1.1-rebs34c_l14.5

Sequence:


               
               CGTGGGTGACCTCACTGAGGTCAAAGGGCAGACCAGCGGCAGTGTCTGGAGCTCATACCG
TAAGAGCTGCGTGGACATGGTCATGAAGTGGCTGGTGCCTGAGAGCAGCGGCCGGTATGT
CAACAGGATGACCAACGAAGCACTGCACAAAGGGTGCTCACTGAAGGTTCTGGCGGACAG
TGAGCGATACACGTGGATTGTGCTGTGAGGGCCCGGCCACCCTGGACACTGACTCCAACT
ACCTCCGCGGCCTGGGAGCTGGCCGCCTTCCTGGCAGCCTCTGCCCGGCTGGCCGGCCGA
CCGACTGATGACCGGCACTAGTGTTAGGCTGCGGGAAGGGGGCTGGGTGGGGCAGCCCCT
GGTGGCCTGAGAGTCTGGACGCTTCTTATTTATGCCTATTTAAGTTGGAAAGGAGCAGAG
GGAGGGAGCCCCCTGCCCCACCAACCTTGAGCGCCCGCCTTCACCCTAAGCTGGCCCTCA
TTCCTCGCGAGTTTGCCTCCTTCCTCGGCTACAGGCGTGGACATTGCCTTCCCCTGTCCA
GGGAGGCCGGATGGATCCCGTCCCCCTATCCTTACCATCCCCAGCCTCCCTCCACCTGAG
GTGGTGAACCTCGTAGCCATCACACCTCCCCCTCTCCACCCTGTTCCTCTTCACATAATA
AATGTTTTATTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGGGTGACCTCACTGAGGTCAAAGGGCAGACCAGCGGCAGTGTCTGGAGCTCATACCG
TAAGAGCTGCGTGGACATGGTCATGAAGTGGCTGGTGCCTGAGAGCAGCGGCCGGTATGT
CAACAGGATGACCAACGAAGCACTGCACAAAGGGTGCTCACTGAAGGTTCTGGCGGACAG
TGAGCGATACACGTGGATTGTGCTGTGAGGGCCCGGCCACCCTGGACACTGACTCCAACT
ACCTCCGCGGCCTGGGAGCTGGCCGCCTTCCTGGCAGCCTCTGCCCGGCTGGCCGGCCGA
CCGACTGATGACCGGCACTAGTGTTAGGCTGCGGGAAGGGGGCTGGGTGGGGCAGCCCCT
GGTGGCCTGAGAGTCTGGACGCTTCTTATTTATGCCTATTTAAGTTGGAAAGGAGCAGAG
GGAGGGAGCCCCCTGCCCCACCAACCTTGAGCGCCCGCCTTCACCCTAAGCTGGCCCTCA
TTCCTCGCGAGTTTGCCTCCTTCCTCGGCTACAGGCGTGGACATTGCCTTCCCCTGTCCA
GGGAGGCCGGATGGATCCCGTCCCCCTATCCTTACCATCCCCAGCCTCCCTCCACCTGAG
GTGGTGAACCTCGTAGCCATCACACCTCCCCCTCTCCACCCTGTTCCTCTTCACATAATA
AATGTTTTATTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               340-645, - strand, RNAz p=0.980476

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               340-645, - strand, RNAz p=0.980476

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               151-677, gnl|bosTau2|chr7 (7840792-7840247)
               

               
               151-677, gnl|Hg17|chr19 (13932750-13933256)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               151-677, gnl|bosTau2|chr7 (7840792-7840247)
               

               
               151-677, gnl|Hg17|chr19 (13932750-13933256)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.197785)
               

               
               cst (0.140036)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               cst (0.140036)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	151-677, gnl\|bosTau2\|chr7 (7840792-7840247)
	151-677, gnl\|Hg17\|chr19 (13932750-13933256)

	fcc (0.197785)
	cst (0.140036)
	ebs (0.118301)
	med (0.116252)
	jca (0.11396)