Non-Coding RNA Search

Ss1.1-rebs34c_p10.5

Sequence:


               
               TGGGATTTTAACTTGGATTCACTTTCTGTTGGACAACTAGCTCCACCTTCCACTTTTCTG
CTGGTTGAGTCTAAGTGGTCATCCCTAATGCATTAGATTATCAAAAAGTGTAAATTCTAT
GAGTGAGTGGTGTTGGCAGTGTTTGTATACCAAGATGCATGGAATGTTTGACGAAGAAAC
CAAAACACCAAAAATGGTGAGCCTTTACCCTCCTCTATTTCTTTAATCCGCTGTTTGAAG
AACCATATTTTGATGGCGGAACCAGTAGTTACCTCTGGGCCAGGTTGGAAATGAAATCAA
TTTTTTAAACCACTAATACTTGCCAAGAAATCGCCTTATGAGAACATGGTGTGTGTCTCT
GACAATGCATGGCACATCAAAATTGATCATCATAGTTTTCTCTACCCTGATTTTGTACTG
GGGAGTGGCCAAAGCCTGAGGCACCTGCATATTTCTCTTCCATGTGTTTCATGCATCCCC
TGTGGCTGGGATGTGACCGAGCCTCAGACTCTCACCACTCCCGTACATGCAGGTCTCCAT
GAAGAGGCTGGGACACATTCACATTCAAGATCCAAATGCTGTGCATACAGTGCAAGCTTA
GATCTTCTGTAAACGGAGGGTCATTTCTCATTTTTTTTAAATGTCTCCACCATGGATTCC
AAAACATTTTCAGCATCAGACATGAAAACATTGATGAATGAGGAATAATCACAAAAGCTG
TGTATCTGTATATAGCTCTACACAACATGTTTGTGATACGGAGTCATTATTTAAAGCACA
TGCCAGGGAAAGAGACCGAATTTTGAGGTCTTTTACATACAGTGACATGGTACTAAGGAG
AATTAAACTCCTCCTGCTTCCTCTGAAGATTACAAAAAATTAAAAGTGGTTATAACTTCA
TAAAACTCATGACCAAGTCTGGTAAACATGTGCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGATTTTAACTTGGATTCACTTTCTGTTGGACAACTAGCTCCACCTTCCACTTTTCTG
CTGGTTGAGTCTAAGTGGTCATCCCTAATGCATTAGATTATCAAAAAGTGTAAATTCTAT
GAGTGAGTGGTGTTGGCAGTGTTTGTATACCAAGATGCATGGAATGTTTGACGAAGAAAC
CAAAACACCAAAAATGGTGAGCCTTTACCCTCCTCTATTTCTTTAATCCGCTGTTTGAAG
AACCATATTTTGATGGCGGAACCAGTAGTTACCTCTGGGCCAGGTTGGAAATGAAATCAA
TTTTTTAAACCACTAATACTTGCCAAGAAATCGCCTTATGAGAACATGGTGTGTGTCTCT
GACAATGCATGGCACATCAAAATTGATCATCATAGTTTTCTCTACCCTGATTTTGTACTG
GGGAGTGGCCAAAGCCTGAGGCACCTGCATATTTCTCTTCCATGTGTTTCATGCATCCCC
TGTGGCTGGGATGTGACCGAGCCTCAGACTCTCACCACTCCCGTACATGCAGGTCTCCAT
GAAGAGGCTGGGACACATTCACATTCAAGATCCAAATGCTGTGCATACAGTGCAAGCTTA
GATCTTCTGTAAACGGAGGGTCATTTCTCATTTTTTTTAAATGTCTCCACCATGGATTCC
AAAACATTTTCAGCATCAGACATGAAAACATTGATGAATGAGGAATAATCACAAAAGCTG
TGTATCTGTATATAGCTCTACACAACATGTTTGTGATACGGAGTCATTATTTAAAGCACA
TGCCAGGGAAAGAGACCGAATTTTGAGGTCTTTTACATACAGTGACATGGTACTAAGGAG
AATTAAACTCCTCCTGCTTCCTCTGAAGATTACAAAAAATTAAAAGTGGTTATAACTTCA
TAAAACTCATGACCAAGTCTGGTAAACATGTGCAAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               426-545, - strand, RNAz p=0.996942
               

               
               715-833, + strand, RNAz p=0.724958

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               426-545, - strand, RNAz p=0.996942
               

               
               715-833, + strand, RNAz p=0.724958

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               513-591, - strand, RNAmicro p=0.95925

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               513-591, - strand, RNAmicro p=0.95925

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015576, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015576, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-936, gnl|bosTau2|chr22 (34498085-34499039)
               

               
               1-936, gnl|Hg17|chr3 (55519981-55519031)
               

               
               1-936, gnl|Mm7|chr14 (25905629-25906586)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-936, gnl|bosTau2|chr22 (34498085-34499039)
               

               
               1-936, gnl|Hg17|chr3 (55519981-55519031)
               

               
               1-936, gnl|Mm7|chr14 (25905629-25906586)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.236602)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)

	426-545, - strand, RNAz p=0.996942
	715-833, + strand, RNAz p=0.724958

	1-936, gnl\|bosTau2\|chr22 (34498085-34499039)
	1-936, gnl\|Hg17\|chr3 (55519981-55519031)
	1-936, gnl\|Mm7\|chr14 (25905629-25906586)