Non-Coding RNA Search

Ss1.1-rebs35c_c22.5

Sequence:


               
               AAGGGAAGCACCGGAAGTTCAAGCACACGCATGACAAGAAGGCCCTGAAAGAGACCCTCG
GAGCCTAGGGCATCGCAGGAGAGTGCGGGCAGGGTTATTTAATATGGTATTTGCTGTATC
GCCCCCATGGGGTCCTTGGAGTGATAATATTGTTCCCCTCGTCCGTCTGTCTCGATGCCT
GATTCGGACGGCCAATGGTGCTCCCCCCGCCCTCCACGCGTCCGTCCACCCTTCCACCAG
TGGGTCTTCCCTCAGTGGCCTCCAGCGTCTTGCCCAGAAGCTCGAGAAGGAAACGAAGGA
CCTGGACTGCATCGCTCTCTTCCTCTACTGACCTGGTGAAAATGGGCTGAGAGTGCAAGA
GAGACGGATGGGGTCGCTGTTGGGGGATGGGGCTTCCCTCCGCGGCACCGTGGACTGGCC
TGGAACCCTGCTCGTGGGCCTGAGGACCTCTCAGCATGGCCTGCCTGGTCCCTGGACCCC
CAGCCAGCTCTGAAGGAAGCACCCCCAGGCAGGCCAGGGTACTCGTACTCCTGCAGCTGA
GTGAGACTCCCGGGGGGAGCAGAGACTGGAGAAAACCCTCTCCCCAAGTGCCAGGCCCGG
TCATCTCTCCTTGGTCACCTCTGCTTACAGTGGTTCCTTTTCATTTTATACGTTTGAATT
CTTTGAAGATGTGGACTCTTCCGGGCGGGTGTGGCCGGAGTGCCAGGCAGCCAAGTGCCC
TCTCAGACAGGTTAGAGATGAAGTTTGCCTCAGAGGTGGATGTAGATGGCAACCTGGGCA
TCCACTGCCTCCTCCCACCACCACCCCCCCTTCACTTTTTCCTCTGTGTCATCTCTCTAC
CTCCACCCCGTGTCTCCTCCTGTCCTGGCCCTTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGAAGCACCGGAAGTTCAAGCACACGCATGACAAGAAGGCCCTGAAAGAGACCCTCG
GAGCCTAGGGCATCGCAGGAGAGTGCGGGCAGGGTTATTTAATATGGTATTTGCTGTATC
GCCCCCATGGGGTCCTTGGAGTGATAATATTGTTCCCCTCGTCCGTCTGTCTCGATGCCT
GATTCGGACGGCCAATGGTGCTCCCCCCGCCCTCCACGCGTCCGTCCACCCTTCCACCAG
TGGGTCTTCCCTCAGTGGCCTCCAGCGTCTTGCCCAGAAGCTCGAGAAGGAAACGAAGGA
CCTGGACTGCATCGCTCTCTTCCTCTACTGACCTGGTGAAAATGGGCTGAGAGTGCAAGA
GAGACGGATGGGGTCGCTGTTGGGGGATGGGGCTTCCCTCCGCGGCACCGTGGACTGGCC
TGGAACCCTGCTCGTGGGCCTGAGGACCTCTCAGCATGGCCTGCCTGGTCCCTGGACCCC
CAGCCAGCTCTGAAGGAAGCACCCCCAGGCAGGCCAGGGTACTCGTACTCCTGCAGCTGA
GTGAGACTCCCGGGGGGAGCAGAGACTGGAGAAAACCCTCTCCCCAAGTGCCAGGCCCGG
TCATCTCTCCTTGGTCACCTCTGCTTACAGTGGTTCCTTTTCATTTTATACGTTTGAATT
CTTTGAAGATGTGGACTCTTCCGGGCGGGTGTGGCCGGAGTGCCAGGCAGCCAAGTGCCC
TCTCAGACAGGTTAGAGATGAAGTTTGCCTCAGAGGTGGATGTAGATGGCAACCTGGGCA
TCCACTGCCTCCTCCCACCACCACCCCCCCTTCACTTTTTCCTCTGTGTCATCTCTCTAC
CTCCACCCCGTGTCTCCTCCTGTCCTGGCCCTTTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1335311|emb|CAA25230.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1335311|emb|CAA25230.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               436-550, - strand, RNAz p=0.986595
               

               
               745-845, + strand, RNAz p=0.999959

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               436-550, - strand, RNAz p=0.986595
               

               
               745-845, + strand, RNAz p=0.999959

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002608, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002608, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               90-860, gnl|bosTau2|chr5 (69645143-69644378)
               

               
               90-860, gnl|Hg17|chr22 (37945821-37945017)
               

               
               90-860, gnl|Mm7|chr15 (80081392-80080750)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-860, gnl|bosTau2|chr5 (69645143-69644378)
               

               
               90-860, gnl|Hg17|chr22 (37945821-37945017)
               

               
               90-860, gnl|Mm7|chr15 (80081392-80080750)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.383362)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)

	436-550, - strand, RNAz p=0.986595
	745-845, + strand, RNAz p=0.999959

	90-860, gnl\|bosTau2\|chr5 (69645143-69644378)
	90-860, gnl\|Hg17\|chr22 (37945821-37945017)
	90-860, gnl\|Mm7\|chr15 (80081392-80080750)