Non-Coding RNA Search

Ss1.1-rebs35c_c8.5

Sequence:


               
               GCGGGGGCGGGTGCCACGTGGCCTCGGGGCCCGGGTGGGTCCCTCCGCTCTCAGGTCTCC
GCTCACTTCTCCACCGCTGCTCGCTGCCCGCCCTCCAACCGGACCATGGCCCACGCGGAG
CGCACCTTCATCGCGGTCAAGCCGGACGGCGTCCAGCGCGGTCTCGTGGGCGAGATCATC
AAGCGCTTCGAGCAGAAGGGATTCCGCCTCGTTGCCTTGAAGTTCCTTCAGGCCTCTGAG
GAACTCCTGAAGCAGCACTACATTGACCTGAAAGACCGGCCCTTCTTCCCGGGACTGGTG
AAGTACATGGGCTCAGGGCCAGTTGTGGCGATGGTCTGGGAGGGGCTGAATGTAGTGAAG
ACAGGCCGAGTGATGCTTGGAGAGACCAACCCAGCGGATTCTAAGCCAGGCACCATTCGC
GGGGACTTCTGCATTCAGGTTGGCAGGAACATCATTCATGGCAGTGATTCAGTAAAAAGC
GCTGAGAAAGAAATCAGCCTGTGGTTTAAGCCCGAAGAGTTGGTTGAGTACAAGTCTTGT
GCTTTTGACTGGATCTATGAATAAGAGGTGGACAGAGCATCGGTCCCCTTTGGCACGGCT
TGATGTGTCCTGAGACACAGCTCTTCATTCCATGGACTTGGAAGCAGTAGGACGGGTCTT
CCCTGAGGCGTATTTACCAATAAAGCCTTTAAAAACTGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGGGCGGGTGCCACGTGGCCTCGGGGCCCGGGTGGGTCCCTCCGCTCTCAGGTCTCC
GCTCACTTCTCCACCGCTGCTCGCTGCCCGCCCTCCAACCGGACCATGGCCCACGCGGAG
CGCACCTTCATCGCGGTCAAGCCGGACGGCGTCCAGCGCGGTCTCGTGGGCGAGATCATC
AAGCGCTTCGAGCAGAAGGGATTCCGCCTCGTTGCCTTGAAGTTCCTTCAGGCCTCTGAG
GAACTCCTGAAGCAGCACTACATTGACCTGAAAGACCGGCCCTTCTTCCCGGGACTGGTG
AAGTACATGGGCTCAGGGCCAGTTGTGGCGATGGTCTGGGAGGGGCTGAATGTAGTGAAG
ACAGGCCGAGTGATGCTTGGAGAGACCAACCCAGCGGATTCTAAGCCAGGCACCATTCGC
GGGGACTTCTGCATTCAGGTTGGCAGGAACATCATTCATGGCAGTGATTCAGTAAAAAGC
GCTGAGAAAGAAATCAGCCTGTGGTTTAAGCCCGAAGAGTTGGTTGAGTACAAGTCTTGT
GCTTTTGACTGGATCTATGAATAAGAGGTGGACAGAGCATCGGTCCCCTTTGGCACGGCT
TGATGTGTCCTGAGACACAGCTCTTCATTCCATGGACTTGGAAGCAGTAGGACGGGTCTT
CCCTGAGGCGTATTTACCAATAAAGCCTTTAAAAACTGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|60822102|gb|AAX36595.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|60822102|gb|AAX36595.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               164-283, - strand, RNAz p=0.697953

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               164-283, - strand, RNAz p=0.697953

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-698, gnl|bosTau2|chr19 (27323151-27323806)
               

               
               50-698, gnl|Hg17|chr12 (119182754-119183377)
               

               
               50-698, gnl|Mm7|chr5 (148594434-148593809)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-698, gnl|bosTau2|chr19 (27323151-27323806)
               

               
               50-698, gnl|Hg17|chr12 (119182754-119183377)
               

               
               50-698, gnl|Mm7|chr5 (148594434-148593809)

Expressed library(ies): 72 entry(ies)

More info

Expressed library(ies): 72 entry(ies)

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               che (2.31734)
               

               
               nep (1.4714)
               

               
               cki (1.32188)
               

               
               mas (1.05152)
               

               
               cbr (1.0238)
               

               
               cje (0.991408)
               

               
               nco (0.970403)
               

               
               nca (0.958117)
               

               
               nms (0.855432)
               

               
               mcp (0.853242)
               

               
               ste (0.811249)
               

               
               elu (0.770713)
               

               
               cag (0.755972)
               

               
               pgl (0.7109)
               

               
               bla (0.621736)
               

               
               fli (0.608643)
               

               
               cly (0.603209)
               

               
               lnt (0.569233)
               

               
               cst (0.560146)
               

               
               cga (0.558191)
               

               
               sag (0.548145)
               

               
               sto (0.539471)
               

               
               ill (0.526778)
               

               
               duo (0.518403)
               

               
               nbm (0.496623)
               

               
               hlv (0.417769)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               fcc (0.39557)
               

               
               eje (0.395335)
               

               
               col (0.390016)
               

               
               thg (0.380373)
               

               
               mgm (0.360685)
               

               
               fty (0.351679)
               

               
               ton (0.351)
               

               
               fbs (0.350693)
               

               
               med (0.348756)
               

               
               cut (0.339847)
               

               
               fhi (0.339155)
               

               
               cli (0.305623)
               

               
               eli (0.303628)
               

               
               bfe (0.299715)
               

               
               jej (0.296765)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               csk (0.281492)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               nmm (0.265604)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               spc (0.226732)
               

               
               ldo (0.194005)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 72 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (2.31734)
               

               
               nep (1.4714)
               

               
               cki (1.32188)
               

               
               mas (1.05152)
               

               
               cbr (1.0238)
               

               
               cje (0.991408)
               

               
               nco (0.970403)
               

               
               nca (0.958117)
               

               
               nms (0.855432)
               

               
               mcp (0.853242)
               

               
               ste (0.811249)
               

               
               elu (0.770713)
               

               
               cag (0.755972)
               

               
               pgl (0.7109)
               

               
               bla (0.621736)
               

               
               fli (0.608643)
               

               
               cly (0.603209)
               

               
               lnt (0.569233)
               

               
               cst (0.560146)
               

               
               cga (0.558191)
               

               
               sag (0.548145)
               

               
               sto (0.539471)
               

               
               ill (0.526778)
               

               
               duo (0.518403)
               

               
               nbm (0.496623)
               

               
               hlv (0.417769)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               fcc (0.39557)
               

               
               eje (0.395335)
               

               
               col (0.390016)
               

               
               thg (0.380373)
               

               
               mgm (0.360685)
               

               
               fty (0.351679)
               

               
               ton (0.351)
               

               
               fbs (0.350693)
               

               
               med (0.348756)
               

               
               cut (0.339847)
               

               
               fhi (0.339155)
               

               
               cli (0.305623)
               

               
               eli (0.303628)
               

               
               bfe (0.299715)
               

               
               jej (0.296765)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               csk (0.281492)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               nmm (0.265604)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               spc (0.226732)
               

               
               ldo (0.194005)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	50-698, gnl\|bosTau2\|chr19 (27323151-27323806)
	50-698, gnl\|Hg17\|chr12 (119182754-119183377)
	50-698, gnl\|Mm7\|chr5 (148594434-148593809)

	che (2.31734)
	nep (1.4714)
	cki (1.32188)
	mas (1.05152)
	cbr (1.0238)
	cje (0.991408)
	nco (0.970403)
	nca (0.958117)
	nms (0.855432)
	mcp (0.853242)
	ste (0.811249)
	elu (0.770713)
	cag (0.755972)
	pgl (0.7109)
	bla (0.621736)
	fli (0.608643)
	cly (0.603209)
	lnt (0.569233)
	cst (0.560146)
	cga (0.558191)
	sag (0.548145)
	sto (0.539471)
	ill (0.526778)
	duo (0.518403)
	nbm (0.496623)
	hlv (0.417769)
	amn (0.417711)
	hea (0.408998)
	fcc (0.39557)
	eje (0.395335)
	col (0.390016)
	thg (0.380373)
	mgm (0.360685)
	fty (0.351679)
	ton (0.351)
	fbs (0.350693)
	med (0.348756)
	cut (0.339847)
	fhi (0.339155)
	cli (0.305623)
	eli (0.303628)
	bfe (0.299715)
	jej (0.296765)
	fat (0.294855)
	ski (0.29347)
	cte (0.29274)
	hyp (0.285673)
	csk (0.281492)
	ssp (0.271039)
	lyg (0.266205)
	nmm (0.265604)
	sug (0.254582)
	ese (0.253004)
	eep (0.245128)
	ebs (0.236602)
	ecc (0.23007)
	ece (0.229305)
	jca (0.22792)
	spc (0.226732)
	ldo (0.194005)
	sin (0.174948)
	rec (0.17307)
	eye (0.170503)
	nje (0.16592)
	csp (0.161186)
	mga (0.160205)
	pty (0.142714)
	ute (0.132784)
	cov (0.132153)
	ova (0.129132)
	eru (0.120048)
	cty (0.10408)