Non-Coding RNA Search

Ss1.1-rebs35c_k10.5

Sequence:


               
               GCGGCCGCCGCCTCGGAGGCCTCAGCCCCCGCCCCGCCCCCAGTGCATCCACAGGGACCT
GGCAGCCCGCAACGTGCTGGTGACGGAGGACAACGTGATGAAGATCGCGGACTTCGGCCT
GGCCCGCGACGTGCACAACCTCGACTACTACAAAAAGACACCAACGGCCGGCTGCCCGTG
AAGTGGATGGCACCCGAGGCCTTGTTCGACCGCGTCTACACCCACCAGAGTGATGTCTGG
TCCTTCGGGGTTCTGCTGTGGGAGATCTTCACGCTGGGGGGCTCGCCGTACCCCGGCATC
CCCGTGGAGGAGCTCTTCAAGCTGCTGAAGGAAGGCCACCGCATGGACAAGCCGGCCAAC
TGCACACACGACCTGTACATGATCATGCGGGAGTGCTGGCACGCCGCGCCCTCCCAGAGG
CCCACCTTCAAGCAGCTGGTGGAGGACCTGGACCGCGTCCTCACGGTGACGTCCACCGAC
GAGTACCTGGACCTGTCGGTGCCCTTCGAGCAGTACTCGCCGGGCGGCCAGGACACGCCC
AGCTCCAGCTCCTCAGGCGACGACTCGGTGTTTGCCCACGACCTGCTGCCTCCGGCCCCA
CCCAGCGGCGGGGGCTCGCGGACGTGAAGGGTCGCAGGCGGCGGGCGGGCCGAGCCCCCA
TCAATGTGAGAGCGGACCCCAGCCCACCGTGCGGCTGCCACGGGGTGACCACGCGTCCCA
CCGGCCAGACCCAGACGGGTCCGGGTGGGCGGACAGACGGCTTTGTGGGTGTGCGTGCAC
ACGCGTGTGCGCAGGGGTCCCTGGGGTGCCTGCCCTGCTGGACAGTGACCTCCCGGCCAC
CTGTGCCAGCAGCACTGGGGACCGAATGTAGAATGCAAGGGGCTCCTCAGGGCAGGGAGC
TGGGCCCCCCACTCCCTTTCCCCCCACTGCCGCCCCACAGGGCATGTCGGGGTGGGCCGA
GCCCCCTCCAAGTGCCCCAAGCTGAGCCTACCGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCCGCCTCGGAGGCCTCAGCCCCCGCCCCGCCCCCAGTGCATCCACAGGGACCT
GGCAGCCCGCAACGTGCTGGTGACGGAGGACAACGTGATGAAGATCGCGGACTTCGGCCT
GGCCCGCGACGTGCACAACCTCGACTACTACAAAAAGACACCAACGGCCGGCTGCCCGTG
AAGTGGATGGCACCCGAGGCCTTGTTCGACCGCGTCTACACCCACCAGAGTGATGTCTGG
TCCTTCGGGGTTCTGCTGTGGGAGATCTTCACGCTGGGGGGCTCGCCGTACCCCGGCATC
CCCGTGGAGGAGCTCTTCAAGCTGCTGAAGGAAGGCCACCGCATGGACAAGCCGGCCAAC
TGCACACACGACCTGTACATGATCATGCGGGAGTGCTGGCACGCCGCGCCCTCCCAGAGG
CCCACCTTCAAGCAGCTGGTGGAGGACCTGGACCGCGTCCTCACGGTGACGTCCACCGAC
GAGTACCTGGACCTGTCGGTGCCCTTCGAGCAGTACTCGCCGGGCGGCCAGGACACGCCC
AGCTCCAGCTCCTCAGGCGACGACTCGGTGTTTGCCCACGACCTGCTGCCTCCGGCCCCA
CCCAGCGGCGGGGGCTCGCGGACGTGAAGGGTCGCAGGCGGCGGGCGGGCCGAGCCCCCA
TCAATGTGAGAGCGGACCCCAGCCCACCGTGCGGCTGCCACGGGGTGACCACGCGTCCCA
CCGGCCAGACCCAGACGGGTCCGGGTGGGCGGACAGACGGCTTTGTGGGTGTGCGTGCAC
ACGCGTGTGCGCAGGGGTCCCTGGGGTGCCTGCCCTGCTGGACAGTGACCTCCCGGCCAC
CTGTGCCAGCAGCACTGGGGACCGAATGTAGAATGCAAGGGGCTCCTCAGGGCAGGGAGC
TGGGCCCCCCACTCCCTTTCCCCCCACTGCCGCCCCACAGGGCATGTCGGGGTGGGCCGA
GCCCCCTCCAAGTGCCCCAAGCTGAGCCTACCGGTA

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               26-198, gnl|bosTau2|chr6 (64464293-64464469)
               

               
               26-198, gnl|canFam2|chr3 (65131030-65130873)
               

               
               26-198, gnl|danRer3|chrUn (62005665-62005512)
               

               
               26-198, gnl|dasNov1|scaffold_23692 (13859-13680)
               

               
               26-198, gnl|echTel1|scaffold_271876 (17823-17665)
               

               
               26-198, gnl|fr1|chrUn (163322363-163322202)
               

               
               26-198, gnl|galGal2|chr4 (83710475-83710324)
               

               
               26-198, gnl|hg17|chr4 (1774982-1775139)
               

               
               26-198, gnl|Hg17|chr4 (1774986-1775168)
               

               
               26-198, gnl|loxAfr1|scaffold_23200 (20428-20587)
               

               
               26-198, gnl|mm7|chr5 (32797420-32797576)
               

               
               26-198, gnl|Mm7|chr5 (32797423-32797606)
               

               
               26-198, gnl|monDom2|scaffold_10 (43734311-43734152)
               

               
               26-198, gnl|oryCun1|scaffold_188203 (15790-15625)
               

               
               26-198, gnl|panTro1|chr3 (1873871-1874028)
               

               
               26-198, gnl|rheMac2|chr1 (2154387-2154230)
               

               
               26-198, gnl|rn3|chr14 (82687565-82687407)
               

               
               26-198, gnl|tetNig1|chr10 (12294420-12294582)
               

               
               26-198, gnl|xenTro1|scaffold_210 (498676-498528)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-198, gnl|bosTau2|chr6 (64464293-64464469)
               

               
               26-198, gnl|canFam2|chr3 (65131030-65130873)
               

               
               26-198, gnl|danRer3|chrUn (62005665-62005512)
               

               
               26-198, gnl|dasNov1|scaffold_23692 (13859-13680)
               

               
               26-198, gnl|echTel1|scaffold_271876 (17823-17665)
               

               
               26-198, gnl|fr1|chrUn (163322363-163322202)
               

               
               26-198, gnl|galGal2|chr4 (83710475-83710324)
               

               
               26-198, gnl|hg17|chr4 (1774982-1775139)
               

               
               26-198, gnl|Hg17|chr4 (1774986-1775168)
               

               
               26-198, gnl|loxAfr1|scaffold_23200 (20428-20587)
               

               
               26-198, gnl|mm7|chr5 (32797420-32797576)
               

               
               26-198, gnl|Mm7|chr5 (32797423-32797606)
               

               
               26-198, gnl|monDom2|scaffold_10 (43734311-43734152)
               

               
               26-198, gnl|oryCun1|scaffold_188203 (15790-15625)
               

               
               26-198, gnl|panTro1|chr3 (1873871-1874028)
               

               
               26-198, gnl|rheMac2|chr1 (2154387-2154230)
               

               
               26-198, gnl|rn3|chr14 (82687565-82687407)
               

               
               26-198, gnl|tetNig1|chr10 (12294420-12294582)
               

               
               26-198, gnl|xenTro1|scaffold_210 (498676-498528)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	26-198, gnl\|bosTau2\|chr6 (64464293-64464469)
	26-198, gnl\|canFam2\|chr3 (65131030-65130873)
	26-198, gnl\|danRer3\|chrUn (62005665-62005512)
	26-198, gnl\|dasNov1\|scaffold_23692 (13859-13680)
	26-198, gnl\|echTel1\|scaffold_271876 (17823-17665)
	26-198, gnl\|fr1\|chrUn (163322363-163322202)
	26-198, gnl\|galGal2\|chr4 (83710475-83710324)
	26-198, gnl\|hg17\|chr4 (1774982-1775139)
	26-198, gnl\|Hg17\|chr4 (1774986-1775168)
	26-198, gnl\|loxAfr1\|scaffold_23200 (20428-20587)
	26-198, gnl\|mm7\|chr5 (32797420-32797576)
	26-198, gnl\|Mm7\|chr5 (32797423-32797606)
	26-198, gnl\|monDom2\|scaffold_10 (43734311-43734152)
	26-198, gnl\|oryCun1\|scaffold_188203 (15790-15625)
	26-198, gnl\|panTro1\|chr3 (1873871-1874028)
	26-198, gnl\|rheMac2\|chr1 (2154387-2154230)
	26-198, gnl\|rn3\|chr14 (82687565-82687407)
	26-198, gnl\|tetNig1\|chr10 (12294420-12294582)
	26-198, gnl\|xenTro1\|scaffold_210 (498676-498528)