Non-Coding RNA Search

Ss1.1-recc2801c_a22.5

Sequence:


               
               TTTTGAATGAGTGTAAATTGTTTTCTTCTGTGTATTTATACTTGTATGTATGATTTGCAT
GTTTCAATGATAAAGGGATAAAACAGTATACTGACAACTGTTTACAAGAAAGTGGAGAAA
AATGTACATACATTTTTGTATGTTTAGATATTACCATAAATACTCAGGATTGGAGCTGCT
TGTAAGTATAACAATATACAGAATAACTTTATTTTATCTTGTCAGAGTCCATCACTAATC
TAAAACAAAGGTGGCACTTTTTCATGTTAACCTTAAACTCTAGGCCTTACTGGAAGCCAC
TGAAGGGGTACACTTCACTACCAGATGGGTATGCAGTGCCACAGATGGTCATTTTCACTG
TGAGGCACTGATTCTGCCTTCAGAGGTTCTGACCAGATTGGCTGCTGAAATAGCCCCTGA
TTTTCTGAAGGCTTGAAGAGGACAAAAATAAAGTTTACATACTCTTGATGTGAAGTGCAT
TTAAATGTTTGTTGGCTTGTTGCAGTACTATAAACACGGAGCTGTTAATAATGGTTATGT
AGATTACTGTGATTTGAAAACTAAATTCACAAAAACTTACATTAGTGAAGAATTAGTAAG
TTTTTTCTTAAATAACTTTAACACTACATATATTTTAACCGTAAACAGGAATCGCTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGAATGAGTGTAAATTGTTTTCTTCTGTGTATTTATACTTGTATGTATGATTTGCAT
GTTTCAATGATAAAGGGATAAAACAGTATACTGACAACTGTTTACAAGAAAGTGGAGAAA
AATGTACATACATTTTTGTATGTTTAGATATTACCATAAATACTCAGGATTGGAGCTGCT
TGTAAGTATAACAATATACAGAATAACTTTATTTTATCTTGTCAGAGTCCATCACTAATC
TAAAACAAAGGTGGCACTTTTTCATGTTAACCTTAAACTCTAGGCCTTACTGGAAGCCAC
TGAAGGGGTACACTTCACTACCAGATGGGTATGCAGTGCCACAGATGGTCATTTTCACTG
TGAGGCACTGATTCTGCCTTCAGAGGTTCTGACCAGATTGGCTGCTGAAATAGCCCCTGA
TTTTCTGAAGGCTTGAAGAGGACAAAAATAAAGTTTACATACTCTTGATGTGAAGTGCAT
TTAAATGTTTGTTGGCTTGTTGCAGTACTATAAACACGGAGCTGTTAATAATGGTTATGT
AGATTACTGTGATTTGAAAACTAAATTCACAAAAACTTACATTAGTGAAGAATTAGTAAG
TTTTTTCTTAAATAACTTTAACACTACATATATTTTAACCGTAAACAGGAATCGCTTTTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.90889
               

               
               276-432, + strand, RNAz p=0.963403

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.90889
               

               
               276-432, + strand, RNAz p=0.963403

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_058241, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_058241, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr2 (38541260-38540599)
               

               
               1-660, gnl|Hg17|chr2 (135546305-135546960)
               

               
               1-660, gnl|Mm7|chr1 (127683400-127684041)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr2 (38541260-38540599)
               

               
               1-660, gnl|Hg17|chr2 (135546305-135546960)
               

               
               1-660, gnl|Mm7|chr1 (127683400-127684041)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               ecc (0.115035)

	80-199, - strand, RNAz p=0.90889
	276-432, + strand, RNAz p=0.963403

	1-660, gnl\|bosTau2\|chr2 (38541260-38540599)
	1-660, gnl\|Hg17\|chr2 (135546305-135546960)
	1-660, gnl\|Mm7\|chr1 (127683400-127684041)