Non-Coding RNA Search

Ss1.1-recc2801c_h15.5.5

Sequence:


               
               GGCTGATCCGGTGATGGGAGGTAGCCAGGCCTGCCCGCCCCCTGGGCCTGAGCCAGGGCC
CCCTATTGGCCGTGGGCGTGAGTCCCCTGCCCTGATTTAGCCCCTTACCCTATTTATTAT
CGTAGCTATTTATTTATTTATTGGAGATGTCCCCCAGGGGCTTGGGCGCCCCATCTGCTC
TGCGCCCCACCCTGTACATACAGCCCTATTCCCGCTCTGCCGTGGCGTGTTGTGGCCCTG
TGAACTCACCACTCACCCTTCTCTCCAGACCCCACCTTTTTATAAATTCACCCCCATCAA
CAGTTATCGGTTTTGAAGAGGGGGCCAGAGGACACCCCAGGGCAGGCTGATCCGGTGATG
GGAGGTAGCCAGGCCTGCCAGCCCCCAGCTTCGACAGGGTGGGCCAAGGTAGCTGCGGGC
TTCTTAGCATGGACCATGGAGTGGGTCAGAGGCGGGAAACGGTCTGCCTGGCTTCTCGCC
CCCAAGGTTGTACCTATTTTGGGGTTTAGGGGGGATGGCTGCTGTGGGTATTCAGCACCT
TGAGACAGCCCCCTGCACCAGACCTGTTCTGATGTCATGAGTGTCAAACATGCCCCCCAG
TCCCCCCAGGAGATGTCATGACAACACTACACACACCCAATAAAGCAAATGGACGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGATCCGGTGATGGGAGGTAGCCAGGCCTGCCCGCCCCCTGGGCCTGAGCCAGGGCC
CCCTATTGGCCGTGGGCGTGAGTCCCCTGCCCTGATTTAGCCCCTTACCCTATTTATTAT
CGTAGCTATTTATTTATTTATTGGAGATGTCCCCCAGGGGCTTGGGCGCCCCATCTGCTC
TGCGCCCCACCCTGTACATACAGCCCTATTCCCGCTCTGCCGTGGCGTGTTGTGGCCCTG
TGAACTCACCACTCACCCTTCTCTCCAGACCCCACCTTTTTATAAATTCACCCCCATCAA
CAGTTATCGGTTTTGAAGAGGGGGCCAGAGGACACCCCAGGGCAGGCTGATCCGGTGATG
GGAGGTAGCCAGGCCTGCCAGCCCCCAGCTTCGACAGGGTGGGCCAAGGTAGCTGCGGGC
TTCTTAGCATGGACCATGGAGTGGGTCAGAGGCGGGAAACGGTCTGCCTGGCTTCTCGCC
CCCAAGGTTGTACCTATTTTGGGGTTTAGGGGGGATGGCTGCTGTGGGTATTCAGCACCT
TGAGACAGCCCCCTGCACCAGACCTGTTCTGATGTCATGAGTGTCAAACATGCCCCCCAG
TCCCCCCAGGAGATGTCATGACAACACTACACACACCCAATAAAGCAAATGGACGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               30-221, - strand, RNAz p=0.749989

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               30-221, - strand, RNAz p=0.749989

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               30-661, gnl|bosTau2|chr7 (4235923-4236550)
               

               
               30-661, gnl|Hg17|chr19 (18169236-18168605)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-661, gnl|bosTau2|chr7 (4235923-4236550)
               

               
               30-661, gnl|Hg17|chr19 (18169236-18168605)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fcc (1.18671)
               

               
               fhi (0.508733)
               

               
               ece (0.45861)
               

               
               hyp (0.42851)
               

               
               fbs (0.350693)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (1.18671)
               

               
               fhi (0.508733)
               

               
               ece (0.45861)
               

               
               hyp (0.42851)
               

               
               fbs (0.350693)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

	30-661, gnl\|bosTau2\|chr7 (4235923-4236550)
	30-661, gnl\|Hg17\|chr19 (18169236-18168605)

	fcc (1.18671)
	fhi (0.508733)
	ece (0.45861)
	hyp (0.42851)
	fbs (0.350693)
	cov (0.132153)
	ecc (0.115035)