Ss1.1-recc2801c_j13.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GGCGATCCTAAAGCCACGCAAGGTGTGCGTGGGGGGCAAGCGGAGGAAGGACGAGATCAG TGTCGACAGCCTGGACTTTAGCAAAAAGATCTTGCATACAGCTTGGCACCCCTCAGAAAA TATCATAGCAGTGGCGGCTACAAACAACCTCTATATATTCCAGGACAAGGTCAACTAGAA GGACGCGTTAGTACTTAATAATCTCACACACTGAATACTAGTCAAAACACTTTTTAAATG TTTCTTTGGGTGTTCGTTTGATGCAGCGACATTCATTTCCCTACGCAGGAAACAACTGGA ATAGAACTCATTGGATTCCGACTTTCCCAAATCCTCAGTTCTAAGAAACTTTTTGTCAAA CCCAGTAGGTTCTGGGACACTCCTTCCTGTTTAGAATTGAGAGCTGCCAGCTAACCGTAA TTCTTCCATAGTTGACTTGAATTTCTGATGCTTTTATTGCCCCGTTTTTCTCTGGTGGGT CCCGTGTTTTGTTTATAGGTGTCTGCTGAGATAAAAAATGAGGTTGTCTGTAGTATTTAA AGAGAAAAGAGATAAGTTTTTTTTTTAATTAAGCAATTCCACTTGATTGAAAAAAATTCA ACGAAAAAATAAAACACCGTTTACTCTAAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GGCGATCCTAAAGCCACGCAAGGTGTGCGTGGGGGGCAAGCGGAGGAAGGACGAGATCAG TGTCGACAGCCTGGACTTTAGCAAAAAGATCTTGCATACAGCTTGGCACCCCTCAGAAAA TATCATAGCAGTGGCGGCTACAAACAACCTCTATATATTCCAGGACAAGGTCAACTAGAA GGACGCGTTAGTACTTAATAATCTCACACACTGAATACTAGTCAAAACACTTTTTAAATG TTTCTTTGGGTGTTCGTTTGATGCAGCGACATTCATTTCCCTACGCAGGAAACAACTGGA ATAGAACTCATTGGATTCCGACTTTCCCAAATCCTCAGTTCTAAGAAACTTTTTGTCAAA CCCAGTAGGTTCTGGGACACTCCTTCCTGTTTAGAATTGAGAGCTGCCAGCTAACCGTAA TTCTTCCATAGTTGACTTGAATTTCTGATGCTTTTATTGCCCCGTTTTTCTCTGGTGGGT CCCGTGTTTTGTTTATAGGTGTCTGCTGAGATAAAAAATGAGGTTGTCTGTAGTATTTAA AGAGAAAAGAGATAAGTTTTTTTTTTAATTAAGCAATTCCACTTGATTGAAAAAAATTCA ACGAAAAAATAAAACACCGTTTACTCTAAAAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
281-396, - strand, RNAz p=0.583721 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
281-396, - strand, RNAz p=0.583721 |
Aligned organism(s): 22 entry(ies) | More info |
Aligned organism(s): 22 entry(ies) | Help | Less info |
1-176, gnl|bosTau2|chr6 (59186440-59186615) | |
1-176, gnl|canFam2|chr3 (61344824-61345135) | |
1-176, gnl|danRer3|chr1 (11840508-11840192) | |
1-176, gnl|dasNov1|scaffold_297313 (529-839) | |
1-176, gnl|echTel1|scaffold_323645 (3375-3654) | |
1-176, gnl|fr1|chrUn (17200004-17199699) | |
1-176, gnl|galGal2|chr4 (79849433-79849744) | |
1-176, gnl|hg17|chr4 (6443101-6443412) | |
1-176, gnl|Hg17|chr4 (6443290-6443115) | |
1-176, gnl|loxAfr1|scaffold_16240 (13693-13995) | |
1-176, gnl|mm7|chr5 (36034037-36033727) | |
1-176, gnl|Mm7|chr5 (36033847-36034022) | |
1-176, gnl|monDom2|scaffold_10 (33981711-33982022) | |
1-176, gnl|oryCun1|scaffold_95645 (1339-1020) | |
1-176, gnl|panTro1|chr3 (6506905-6507216) | |
1-176, gnl|rheMac2|chr5 (2479518-2479207) | |
1-176, gnl|rn3|chr14 (79420316-79420626) | |
1-176, gnl|tetNig1|chr1 (6853287-6853602) | |
1-176, gnl|xenTro1|scaffold_119 (1095535-1095830) | |
187-639, gnl|bosTau2|chr19 (39290854-39291288) | |
187-639, gnl|Hg17|chr5 (145949718-145949260) | |
187-639, gnl|Mm7|chr18 (43023632-43023180) |
Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-176, gnl|bosTau2|chr6 (59186440-59186615) | |
1-176, gnl|canFam2|chr3 (61344824-61345135) | |
1-176, gnl|danRer3|chr1 (11840508-11840192) | |
1-176, gnl|dasNov1|scaffold_297313 (529-839) | |
1-176, gnl|echTel1|scaffold_323645 (3375-3654) | |
1-176, gnl|fr1|chrUn (17200004-17199699) | |
1-176, gnl|galGal2|chr4 (79849433-79849744) | |
1-176, gnl|hg17|chr4 (6443101-6443412) | |
1-176, gnl|Hg17|chr4 (6443290-6443115) | |
1-176, gnl|loxAfr1|scaffold_16240 (13693-13995) | |
1-176, gnl|mm7|chr5 (36034037-36033727) | |
1-176, gnl|Mm7|chr5 (36033847-36034022) | |
1-176, gnl|monDom2|scaffold_10 (33981711-33982022) | |
1-176, gnl|oryCun1|scaffold_95645 (1339-1020) | |
1-176, gnl|panTro1|chr3 (6506905-6507216) | |
1-176, gnl|rheMac2|chr5 (2479518-2479207) | |
1-176, gnl|rn3|chr14 (79420316-79420626) | |
1-176, gnl|tetNig1|chr1 (6853287-6853602) | |
1-176, gnl|xenTro1|scaffold_119 (1095535-1095830) | |
187-639, gnl|bosTau2|chr19 (39290854-39291288) | |
187-639, gnl|Hg17|chr5 (145949718-145949260) | |
187-639, gnl|Mm7|chr18 (43023632-43023180) |
Expressed library(ies): 9 entry(ies) | More info |
Expressed library(ies): 9 entry(ies) | Help | Less info |
fco (0.471624) | |
hyp (0.285673) | |
spc (0.226732) | |
fcc (0.197785) | |
fbs (0.175346) | |
sug (0.127291) | |
ese (0.126502) | |
pgl (0.118483) | |
ecc (0.115035) |
Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
fco (0.471624) | |
hyp (0.285673) | |
spc (0.226732) | |
fcc (0.197785) | |
fbs (0.175346) | |
sug (0.127291) | |
ese (0.126502) | |
pgl (0.118483) | |
ecc (0.115035) |