Non-Coding RNA Search

Ss1.1-recc2802c_g21.5

Sequence:


               
               TTTTTTTTTTTTGTCTTGATATTTTTTTTTTTTTTTTTTTTGGCGCTTGACTCAGGATTT
AAAAACTGGAACGGTGAAGGTGACAGCAGTCGGTTGGATGGAGCATCCCCCAAAGTTTTA
CAATGTGGCCGAGGACTTTGATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATA
GTCATTCCAAGTATCATGAGATGCATTGTTACAGGAAGTCCCTGCCTTCCCAAAAGCTGC
CCCGCCTCCCCCTGAGGAGAAGGGCCAGTCCTCGCCCAGGTCCACCCGAGGAGGGCAGTA
GCATCGCTTTAGTGTAAATTATGTACTCCAACATTTTTTTTAATCTTCGCCTTAATACTT
GTTCTTTTTGTTTGTTTTATTTTGAGTGGTCAGCCATCACAATCCCCTTTTTTGTCCCGC
AACTTGAAGTATGAAGGCTTTTGGTCCCCCTAGGAGCGGGTTGAGGTGCGGAGGCAGCCA
GGGCTTACCTGTACACTGACTTGAGACCAGTTCAATAAAGTGCACACCTTAAAGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTGTCTTGATATTTTTTTTTTTTTTTTTTTTGGCGCTTGACTCAGGATTT
AAAAACTGGAACGGTGAAGGTGACAGCAGTCGGTTGGATGGAGCATCCCCCAAAGTTTTA
CAATGTGGCCGAGGACTTTGATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATA
GTCATTCCAAGTATCATGAGATGCATTGTTACAGGAAGTCCCTGCCTTCCCAAAAGCTGC
CCCGCCTCCCCCTGAGGAGAAGGGCCAGTCCTCGCCCAGGTCCACCCGAGGAGGGCAGTA
GCATCGCTTTAGTGTAAATTATGTACTCCAACATTTTTTTTAATCTTCGCCTTAATACTT
GTTCTTTTTGTTTGTTTTATTTTGAGTGGTCAGCCATCACAATCCCCTTTTTTGTCCCGC
AACTTGAAGTATGAAGGCTTTTGGTCCCCCTAGGAGCGGGTTGAGGTGCGGAGGCAGCCA
GGGCTTACCTGTACACTGACTTGAGACCAGTTCAATAAAGTGCACACCTTAAAGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-569, gnl|bosTau2|chr1 (93218441-93217878)
               

               
               3-569, gnl|Hg17|chr7 (5340531-5340025)
               

               
               3-569, gnl|Mm7|chr5 (141936580-141936020)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-569, gnl|bosTau2|chr1 (93218441-93217878)
               

               
               3-569, gnl|Hg17|chr7 (5340531-5340025)
               

               
               3-569, gnl|Mm7|chr5 (141936580-141936020)

Expressed library(ies): 60 entry(ies)

More info

Expressed library(ies): 60 entry(ies)

Help | Less info


               
               cly (4.82567)
               

               
               cag (4.23344)
               

               
               jej (4.15471)
               

               
               csp (3.86847)
               

               
               nlu (3.83362)
               

               
               lnt (3.4154)
               

               
               amn (3.34169)
               

               
               eep (3.18667)
               

               
               nbm (3.17839)
               

               
               jca (3.07692)
               

               
               eje (2.96501)
               

               
               fty (2.81343)
               

               
               ecc (2.76084)
               

               
               fce (2.71592)
               

               
               ill (2.4583)
               

               
               ece (2.29305)
               

               
               col (2.14509)
               

               
               nco (2.10254)
               

               
               nca (2.05311)
               

               
               cov (1.98229)
               

               
               elu (1.92678)
               

               
               hyp (1.71404)
               

               
               med (1.62753)
               

               
               pty (1.56986)
               

               
               fhi (1.5262)
               

               
               eru (1.44058)
               

               
               cli (1.37531)
               

               
               eye (1.36402)
               

               
               nmm (1.32802)
               

               
               nep (1.28747)
               

               
               duo (1.20961)
               

               
               fcc (1.18671)
               

               
               ute (1.06228)
               

               
               ton (1.053)
               

               
               mcp (1.02389)
               

               
               ese (1.01202)
               

               
               ebs (0.828108)
               

               
               eli (0.759071)
               

               
               cje (0.660939)
               

               
               clu (0.598229)
               

               
               cga (0.558191)
               

               
               fbs (0.526039)
               

               
               nje (0.49776)
               

               
               cki (0.495704)
               

               
               nms (0.427716)
               

               
               mas (0.42061)
               

               
               fli (0.405762)
               

               
               sto (0.359648)
               

               
               pgl (0.35545)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               sug (0.127291)

Expressed library(ies): 60 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (4.82567)
               

               
               cag (4.23344)
               

               
               jej (4.15471)
               

               
               csp (3.86847)
               

               
               nlu (3.83362)
               

               
               lnt (3.4154)
               

               
               amn (3.34169)
               

               
               eep (3.18667)
               

               
               nbm (3.17839)
               

               
               jca (3.07692)
               

               
               eje (2.96501)
               

               
               fty (2.81343)
               

               
               ecc (2.76084)
               

               
               fce (2.71592)
               

               
               ill (2.4583)
               

               
               ece (2.29305)
               

               
               col (2.14509)
               

               
               nco (2.10254)
               

               
               nca (2.05311)
               

               
               cov (1.98229)
               

               
               elu (1.92678)
               

               
               hyp (1.71404)
               

               
               med (1.62753)
               

               
               pty (1.56986)
               

               
               fhi (1.5262)
               

               
               eru (1.44058)
               

               
               cli (1.37531)
               

               
               eye (1.36402)
               

               
               nmm (1.32802)
               

               
               nep (1.28747)
               

               
               duo (1.20961)
               

               
               fcc (1.18671)
               

               
               ute (1.06228)
               

               
               ton (1.053)
               

               
               mcp (1.02389)
               

               
               ese (1.01202)
               

               
               ebs (0.828108)
               

               
               eli (0.759071)
               

               
               cje (0.660939)
               

               
               clu (0.598229)
               

               
               cga (0.558191)
               

               
               fbs (0.526039)
               

               
               nje (0.49776)
               

               
               cki (0.495704)
               

               
               nms (0.427716)
               

               
               mas (0.42061)
               

               
               fli (0.405762)
               

               
               sto (0.359648)
               

               
               pgl (0.35545)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               sug (0.127291)

	3-569, gnl\|bosTau2\|chr1 (93218441-93217878)
	3-569, gnl\|Hg17\|chr7 (5340531-5340025)
	3-569, gnl\|Mm7\|chr5 (141936580-141936020)

	cly (4.82567)
	cag (4.23344)
	jej (4.15471)
	csp (3.86847)
	nlu (3.83362)
	lnt (3.4154)
	amn (3.34169)
	eep (3.18667)
	nbm (3.17839)
	jca (3.07692)
	eje (2.96501)
	fty (2.81343)
	ecc (2.76084)
	fce (2.71592)
	ill (2.4583)
	ece (2.29305)
	col (2.14509)
	nco (2.10254)
	nca (2.05311)
	cov (1.98229)
	elu (1.92678)
	hyp (1.71404)
	med (1.62753)
	pty (1.56986)
	fhi (1.5262)
	eru (1.44058)
	cli (1.37531)
	eye (1.36402)
	nmm (1.32802)
	nep (1.28747)
	duo (1.20961)
	fcc (1.18671)
	ute (1.06228)
	ton (1.053)
	mcp (1.02389)
	ese (1.01202)
	ebs (0.828108)
	eli (0.759071)
	cje (0.660939)
	clu (0.598229)
	cga (0.558191)
	fbs (0.526039)
	nje (0.49776)
	cki (0.495704)
	nms (0.427716)
	mas (0.42061)
	fli (0.405762)
	sto (0.359648)
	pgl (0.35545)
	tes (0.207814)
	gul (0.177588)
	sin (0.174948)
	cut (0.169924)
	mga (0.160205)
	csk (0.140746)
	cst (0.140036)
	che (0.136314)
	ssp (0.13552)
	pla (0.133672)
	sug (0.127291)