Ss1.1-recc2802c_i2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGGTGAGGGGGCGAGGCCGCGGCTGGGGCGGCGAAACTCTCCACCCCTCAGCCCCACC GCGTGGGACGGCGTGAACGAGGTGTCGGAGGGATGTCCGCCTTCTCTGAGGCGGCGCTGG AGAAGAAGCTGTCGGAGTTGAGCAACTCGCAGCAGAGCGTGCAGACCTTGTCCCTGTGGC TGATCCACCACCGCAAGCACTCGCGGCCCATCGTCACCGTGTGGGAGCGGGAGCTGCGGA AAGCCAAACCAAACAGAAAGCTTACGTTTCTGTACCTAGCCAATGATGTCATTCAGAACA GCAAAAGGAAGGGGCCGGAGTTTACAAAAGATTTTGCCCCAGTTATAGTGGAAGCCTTTA AGCATGTTTCAAGTGAAACTGATGAAAGTTGTAAGAAGCACCTTGGAAGAGTGTTATCTA TTTGGGAAGAAAGGTCTGTTTATGAAAATGATGTATTAGAACAACTTAAGCAAGCTCTTT ATGGTGATAAGAAGCCTAGGAAGCGAACTTATGAACAGATACAGGTGGATGAGAATGAGA ACTGTTCCTCTCTAGGATCTCCAAGTGAACCACCACAGACTCTAGATCTCGTTAGAGCAT TACAAGATTTAGAAAATGCAGCCTCAGGTGATGCAGCAGTTCATCAAAGGATAGCTTCTT TGCCTGTTGAAGTTCAAGAAGTATCTCTTCTAGATAAAATAACAGATAAAGAATCCGGAG AAAGACTTTCTAAAATGGTAGAGGATGCTTGTATGTTGCTGGCAGATTACAATGGCAGAT TGGCGGCTGAAATAGATGATAGGAAGCAACTCACTCGAATGTTAGCAGATTTTCTTCGTT GTCAAAAGGAAGCCCTTGCTGAGAAAGAGCATAAATTGGAAGTATTGGACATGGGCGTAT CTTCTAACGATGTCATCATCATTAGCATATTCTTCCTGCTAAAAATAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGGTGAGGGGGCGAGGCCGCGGCTGGGGCGGCGAAACTCTCCACCCCTCAGCCCCACC GCGTGGGACGGCGTGAACGAGGTGTCGGAGGGATGTCCGCCTTCTCTGAGGCGGCGCTGG AGAAGAAGCTGTCGGAGTTGAGCAACTCGCAGCAGAGCGTGCAGACCTTGTCCCTGTGGC TGATCCACCACCGCAAGCACTCGCGGCCCATCGTCACCGTGTGGGAGCGGGAGCTGCGGA AAGCCAAACCAAACAGAAAGCTTACGTTTCTGTACCTAGCCAATGATGTCATTCAGAACA GCAAAAGGAAGGGGCCGGAGTTTACAAAAGATTTTGCCCCAGTTATAGTGGAAGCCTTTA AGCATGTTTCAAGTGAAACTGATGAAAGTTGTAAGAAGCACCTTGGAAGAGTGTTATCTA TTTGGGAAGAAAGGTCTGTTTATGAAAATGATGTATTAGAACAACTTAAGCAAGCTCTTT ATGGTGATAAGAAGCCTAGGAAGCGAACTTATGAACAGATACAGGTGGATGAGAATGAGA ACTGTTCCTCTCTAGGATCTCCAAGTGAACCACCACAGACTCTAGATCTCGTTAGAGCAT TACAAGATTTAGAAAATGCAGCCTCAGGTGATGCAGCAGTTCATCAAAGGATAGCTTCTT TGCCTGTTGAAGTTCAAGAAGTATCTCTTCTAGATAAAATAACAGATAAAGAATCCGGAG AAAGACTTTCTAAAATGGTAGAGGATGCTTGTATGTTGCTGGCAGATTACAATGGCAGAT TGGCGGCTGAAATAGATGATAGGAAGCAACTCACTCGAATGTTAGCAGATTTTCTTCGTT GTCAAAAGGAAGCCCTTGCTGAGAAAGAGCATAAATTGGAAGTATTGGACATGGGCGTAT CTTCTAACGATGTCATCATCATTAGCATATTCTTCCTGCTAAAAATAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 93-249, gnl|bosTau2|chr13 (48694703-48694547) | |
| 93-249, gnl|Hg17|chr20 (36095764-36095920) | |
| 93-249, gnl|Mm7|chr2 (157769785-157769941) | |
| 372-480, gnl|bosTau2|chr24 (16348387-16348495) | |
| 372-480, gnl|canFam2|chr7 (57126813-57126520) | |
| 372-480, gnl|danRer3|chr2 (1852377-1852038) | |
| 372-480, gnl|dasNov1|scaffold_17906 (30284-29992) | |
| 372-480, gnl|fr1|chrUn (115755708-115756078) | |
| 372-480, gnl|galGal2|chr2 (83448776-83448484) | |
| 372-480, gnl|hg17|chr18 (31864763-31865062) | |
| 372-480, gnl|Hg17|chr18 (31865060-31864952) | |
| 372-480, gnl|loxAfr1|scaffold_55371 (6431-6138) | |
| 372-480, gnl|mm7|chr18 (24892646-24892937) | |
| 372-480, gnl|Mm7|chr18 (24892935-24892827) | |
| 372-480, gnl|monDom2|scaffold_4 (11346260-11345951) | |
| 372-480, gnl|oryCun1|scaffold_160563 (27199-26901) | |
| 372-480, gnl|panTro1|chr17 (27836417-27836716) | |
| 372-480, gnl|rheMac2|chr18 (28993957-28994255) | |
| 372-480, gnl|rn3|chr18 (16330821-16331182) | |
| 372-480, gnl|tetNig1|chr21 (1359199-1358821) | |
| 372-480, gnl|xenTro1|scaffold_915 (132139-131886) | |
| 704-883, gnl|bosTau2|chr24 (16351519-16351698) | |
| 704-883, gnl|canFam2|chr7 (57129996-57130157) | |
| 704-883, gnl|canFam2|chr7 (57130179-57129996) | |
| 704-883, gnl|danRer3|chr2 (1853764-1853927) | |
| 704-883, gnl|danRer3|chr2 (1853948-1853764) | |
| 704-883, gnl|dasNov1|scaffold_17906 (34604-34765) | |
| 704-883, gnl|dasNov1|scaffold_17906 (34787-34604) | |
| 704-883, gnl|echTel1|scaffold_200152 (16857-16696) | |
| 704-883, gnl|echTel1|scaffold_267173 (7089-6906) | |
| 704-883, gnl|fr1|chrUn (115755294-115755131) | |
| 704-883, gnl|fr1|chrUn (115755111-115755294) | |
| 704-883, gnl|galGal2|chr2 (83450309-83450470) | |
| 704-883, gnl|galGal2|chr2 (83450491-83450309) | |
| 704-883, gnl|hg17|chr16 (48638895-48639053) | |
| 704-883, gnl|hg17|chr18 (31860854-31861037) | |
| 704-883, gnl|Hg17|chr18 (31861038-31860859) | |
| 704-883, gnl|loxAfr1|scaffold_55371 (8348-8509) | |
| 704-883, gnl|loxAfr1|scaffold_55371 (8531-8348) | |
| 704-883, gnl|mm7|chr18 (24891667-24891506) | |
| 704-883, gnl|mm7|chr18 (24891484-24891667) | |
| 704-883, gnl|Mm7|chr18 (24891668-24891489) | |
| 704-883, gnl|monDom2|scaffold_4 (11348982-11348799) | |
| 704-883, gnl|monDom2|scaffold_8 (91261018-91261178) | |
| 704-883, gnl|oryCun1|scaffold_160563 (35135-35296) | |
| 704-883, gnl|oryCun1|scaffold_160563 (35318-35135) | |
| 704-883, gnl|panTro1|chr17 (27832499-27832682) | |
| 704-883, gnl|panTro1|chrUn_random (12451139-12451297) | |
| 704-883, gnl|rheMac2|chr18 (28990662-28990845) | |
| 704-883, gnl|rheMac2|chr20 (48254621-48254779) | |
| 704-883, gnl|rn3|chr18 (16329819-16329658) | |
| 704-883, gnl|rn3|chr18 (16329636-16329819) | |
| 704-883, gnl|tetNig1|chr21 (1359797-1359614) | |
| 704-883, gnl|tetNig1|chr9 (1194096-1193933) | |
| 704-883, gnl|xenTro1|scaffold_915 (141754-141909) | |
| 704-883, gnl|xenTro1|scaffold_915 (141931-141748) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 93-249, gnl|bosTau2|chr13 (48694703-48694547) | |
| 93-249, gnl|Hg17|chr20 (36095764-36095920) | |
| 93-249, gnl|Mm7|chr2 (157769785-157769941) | |
| 372-480, gnl|bosTau2|chr24 (16348387-16348495) | |
| 372-480, gnl|canFam2|chr7 (57126813-57126520) | |
| 372-480, gnl|danRer3|chr2 (1852377-1852038) | |
| 372-480, gnl|dasNov1|scaffold_17906 (30284-29992) | |
| 372-480, gnl|fr1|chrUn (115755708-115756078) | |
| 372-480, gnl|galGal2|chr2 (83448776-83448484) | |
| 372-480, gnl|hg17|chr18 (31864763-31865062) | |
| 372-480, gnl|Hg17|chr18 (31865060-31864952) | |
| 372-480, gnl|loxAfr1|scaffold_55371 (6431-6138) | |
| 372-480, gnl|mm7|chr18 (24892646-24892937) | |
| 372-480, gnl|Mm7|chr18 (24892935-24892827) | |
| 372-480, gnl|monDom2|scaffold_4 (11346260-11345951) | |
| 372-480, gnl|oryCun1|scaffold_160563 (27199-26901) | |
| 372-480, gnl|panTro1|chr17 (27836417-27836716) | |
| 372-480, gnl|rheMac2|chr18 (28993957-28994255) | |
| 372-480, gnl|rn3|chr18 (16330821-16331182) | |
| 372-480, gnl|tetNig1|chr21 (1359199-1358821) | |
| 372-480, gnl|xenTro1|scaffold_915 (132139-131886) | |
| 704-883, gnl|bosTau2|chr24 (16351519-16351698) | |
| 704-883, gnl|canFam2|chr7 (57129996-57130157) | |
| 704-883, gnl|canFam2|chr7 (57130179-57129996) | |
| 704-883, gnl|danRer3|chr2 (1853764-1853927) | |
| 704-883, gnl|danRer3|chr2 (1853948-1853764) | |
| 704-883, gnl|dasNov1|scaffold_17906 (34604-34765) | |
| 704-883, gnl|dasNov1|scaffold_17906 (34787-34604) | |
| 704-883, gnl|echTel1|scaffold_200152 (16857-16696) | |
| 704-883, gnl|echTel1|scaffold_267173 (7089-6906) | |
| 704-883, gnl|fr1|chrUn (115755294-115755131) | |
| 704-883, gnl|fr1|chrUn (115755111-115755294) | |
| 704-883, gnl|galGal2|chr2 (83450309-83450470) | |
| 704-883, gnl|galGal2|chr2 (83450491-83450309) | |
| 704-883, gnl|hg17|chr16 (48638895-48639053) | |
| 704-883, gnl|hg17|chr18 (31860854-31861037) | |
| 704-883, gnl|Hg17|chr18 (31861038-31860859) | |
| 704-883, gnl|loxAfr1|scaffold_55371 (8348-8509) | |
| 704-883, gnl|loxAfr1|scaffold_55371 (8531-8348) | |
| 704-883, gnl|mm7|chr18 (24891667-24891506) | |
| 704-883, gnl|mm7|chr18 (24891484-24891667) | |
| 704-883, gnl|Mm7|chr18 (24891668-24891489) | |
| 704-883, gnl|monDom2|scaffold_4 (11348982-11348799) | |
| 704-883, gnl|monDom2|scaffold_8 (91261018-91261178) | |
| 704-883, gnl|oryCun1|scaffold_160563 (35135-35296) | |
| 704-883, gnl|oryCun1|scaffold_160563 (35318-35135) | |
| 704-883, gnl|panTro1|chr17 (27832499-27832682) | |
| 704-883, gnl|panTro1|chrUn_random (12451139-12451297) | |
| 704-883, gnl|rheMac2|chr18 (28990662-28990845) | |
| 704-883, gnl|rheMac2|chr20 (48254621-48254779) | |
| 704-883, gnl|rn3|chr18 (16329819-16329658) | |
| 704-883, gnl|rn3|chr18 (16329636-16329819) | |
| 704-883, gnl|tetNig1|chr21 (1359797-1359614) | |
| 704-883, gnl|tetNig1|chr9 (1194096-1193933) | |
| 704-883, gnl|xenTro1|scaffold_915 (141754-141909) | |
| 704-883, gnl|xenTro1|scaffold_915 (141931-141748) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cbe (0.239234) | |
| gul (0.177588) | |
| csk (0.140746) | |
| cov (0.132153) | |
| ecc (0.115035) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.239234) | |
| gul (0.177588) | |
| csk (0.140746) | |
| cov (0.132153) | |
| ecc (0.115035) |