Non-Coding RNA Search

Ss1.1-recc2802c_k17.5

Sequence:


               
               AAATTCAAACAATTTGTGCTGCTTTTGCATAAAATGTAGACAAGTGAATTTAAAGAAATA
GCAACAACAACAACAACAAGACAAAAAAAAAAAAAAAAAAAAAGAAAACTTATCCATGTT
TCTTGGAGTACATGATCAGGACAAATGAAGTTTATAGTTCACATTCTGTTTAAACATTTC
AGTGTATTTTCTGACGTAATACTTAGTAGGAATCCAATTCAATCTAAAAACATTAAGGAG
GAGTTCTTGCTGTGGTCAACAGGATCAGCGACATCTCTCAAGCACTGGCACACAGGTTCA
GTCCCTGGCCCAGCACAGTGGGTTAAGGATCTGGTGTTGCTGCAGCATAGGTGACAACTG
AGGCTCAGATCTGATCTCTGGTCCAGGAACTCCTAATGTCGTGGGGCAGCCAAAAACAAT
AGTAATAATAAGGAAATTTTGAAGAATAGTATATAGAACTCTAGAGGGTTTTTTCACCCT
CTGTTTACATATTTTCGACATCTTAAACAATGATTTGTGCTACTTTAAGTTTACCCTTTA
AAACACAGAAAGTATTTAGCAAGCCTTTCTTCATGTCTTCTATTGTGCAATATTATGTAC
CTTTTGTTAGGACTACTTTGGTGAGTGTTCAGAGGCTGCAATTAAGGATAATGTGGTCAT
AGTATATGAGCTCTTGGAAGAAATGCTAGACAATGGATTTCCACTGGCTACGGAGTCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTCAAACAATTTGTGCTGCTTTTGCATAAAATGTAGACAAGTGAATTTAAAGAAATA
GCAACAACAACAACAACAAGACAAAAAAAAAAAAAAAAAAAAAGAAAACTTATCCATGTT
TCTTGGAGTACATGATCAGGACAAATGAAGTTTATAGTTCACATTCTGTTTAAACATTTC
AGTGTATTTTCTGACGTAATACTTAGTAGGAATCCAATTCAATCTAAAAACATTAAGGAG
GAGTTCTTGCTGTGGTCAACAGGATCAGCGACATCTCTCAAGCACTGGCACACAGGTTCA
GTCCCTGGCCCAGCACAGTGGGTTAAGGATCTGGTGTTGCTGCAGCATAGGTGACAACTG
AGGCTCAGATCTGATCTCTGGTCCAGGAACTCCTAATGTCGTGGGGCAGCCAAAAACAAT
AGTAATAATAAGGAAATTTTGAAGAATAGTATATAGAACTCTAGAGGGTTTTTTCACCCT
CTGTTTACATATTTTCGACATCTTAAACAATGATTTGTGCTACTTTAAGTTTACCCTTTA
AAACACAGAAAGTATTTAGCAAGCCTTTCTTCATGTCTTCTATTGTGCAATATTATGTAC
CTTTTGTTAGGACTACTTTGGTGAGTGTTCAGAGGCTGCAATTAAGGATAATGTGGTCAT
AGTATATGAGCTCTTGGAAGAAATGCTAGACAATGGATTTCCACTGGCTACGGAGTCTAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               105-237, gnl|bosTau2|chr28 (23236713-23236581)
               

               
               105-237, gnl|Hg17|chr10 (75567213-75567085)
               

               
               105-237, gnl|Mm7|chr14 (18703806-18703677)
               


               
               424-720, gnl|bosTau2|chr28 (23236589-23236293)
               

               
               424-720, gnl|Hg17|chr10 (75567093-75566458)
               

               
               424-720, gnl|Mm7|chr14 (18703685-18703388)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               105-237, gnl|bosTau2|chr28 (23236713-23236581)
               

               
               105-237, gnl|Hg17|chr10 (75567213-75567085)
               

               
               105-237, gnl|Mm7|chr14 (18703806-18703677)
               


               
               424-720, gnl|bosTau2|chr28 (23236589-23236293)
               

               
               424-720, gnl|Hg17|chr10 (75567093-75566458)
               

               
               424-720, gnl|Mm7|chr14 (18703685-18703388)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nmm (0.132802)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               ecc (0.115035)

	105-237, gnl\|bosTau2\|chr28 (23236713-23236581)
	105-237, gnl\|Hg17\|chr10 (75567213-75567085)
	105-237, gnl\|Mm7\|chr14 (18703806-18703677)

	424-720, gnl\|bosTau2\|chr28 (23236589-23236293)
	424-720, gnl\|Hg17\|chr10 (75567093-75566458)
	424-720, gnl\|Mm7\|chr14 (18703685-18703388)