Non-Coding RNA Search

Ss1.1-recc2802c_l24.5

Sequence:


               
               CGCACGCCCTGCGGACCCACGGCTACTGCGCCGCCTACGAGACGCTGTACGCGGCGGCGG
GCGGCGGCGGCGCGAGCCCGGACTACAACAGCTCCGAGTATGAGGGCCCGCTCAGCCCCC
CGCTCTGTCTCAATGGCAACTTCTCGCTCAAGCAGGACTCGTCGCCCGACCACGAGAAGA
GCTACCATTACTCTATGCACTACTCGGCGCTGCCCGGCTCGCGGCCCACGGGCCACGGGC
TGGTCTTTGGCTCGTCTGCTGTGCGCGGGGGCGTCCACTCGGAGAATCTCTTGTCTTACG
ATATGCACCTTCACCACGACCGGGGCCCCATGTACGAGGAGCTCAATGCATTTTTCCATA
ACTGAGACCTCGCGCCCGCCCCTTTCTTTTTCTTTTGCCTTGGCCCGCACCCCTGCCCCC
AGCCCTGTCCCCAGCGCAGGGGCACCCCCAACTACCCCGGCGTGGGGCGCGGGAGCGGGC
CGCGTGTCCTGCCGTTCTCCTGGGCAGCACGGTCCTCTTACCTGTGGGTGGCCCGTCCCA
GGGGCCTCGCTTCCCCCAGGGGACTTGCCTTCTCTCTCCCCAAGGGGTTCCCTCCTCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACGCCCTGCGGACCCACGGCTACTGCGCCGCCTACGAGACGCTGTACGCGGCGGCGG
GCGGCGGCGGCGCGAGCCCGGACTACAACAGCTCCGAGTATGAGGGCCCGCTCAGCCCCC
CGCTCTGTCTCAATGGCAACTTCTCGCTCAAGCAGGACTCGTCGCCCGACCACGAGAAGA
GCTACCATTACTCTATGCACTACTCGGCGCTGCCCGGCTCGCGGCCCACGGGCCACGGGC
TGGTCTTTGGCTCGTCTGCTGTGCGCGGGGGCGTCCACTCGGAGAATCTCTTGTCTTACG
ATATGCACCTTCACCACGACCGGGGCCCCATGTACGAGGAGCTCAATGCATTTTTCCATA
ACTGAGACCTCGCGCCCGCCCCTTTCTTTTTCTTTTGCCTTGGCCCGCACCCCTGCCCCC
AGCCCTGTCCCCAGCGCAGGGGCACCCCCAACTACCCCGGCGTGGGGCGCGGGAGCGGGC
CGCGTGTCCTGCCGTTCTCCTGGGCAGCACGGTCCTCTTACCTGTGGGTGGCCCGTCCCA
GGGGCCTCGCTTCCCCCAGGGGACTTGCCTTCTCTCTCCCCAAGGGGTTCCCTCCTCCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-200, - strand, RNAz p=0.523604

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-200, - strand, RNAz p=0.523604

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               120-232, - strand, RNAmicro p=0.986238

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               120-232, - strand, RNAmicro p=0.986238

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr19 (32256338-32255733)
               

               
               1-600, gnl|Hg17|chr17 (35015594-35014995)
               

               
               1-600, gnl|Mm7|chr11 (98436588-98435992)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr19 (32256338-32255733)
               

               
               1-600, gnl|Hg17|chr17 (35015594-35014995)
               

               
               1-600, gnl|Mm7|chr11 (98436588-98435992)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ecc (0.345105)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.345105)
               

               
               ebs (0.118301)

	1-600, gnl\|bosTau2\|chr19 (32256338-32255733)
	1-600, gnl\|Hg17\|chr17 (35015594-35014995)
	1-600, gnl\|Mm7\|chr11 (98436588-98435992)