Ss1.1-recc2803c_a21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGAAGCATCACTCCAGACCCCAAACCTCCAGGGCCTGAGGCCTAGCCAGCATCCAATGG AGGACAAAAAGAAGAAAAGGAGCCCCAAGCCCTGCCTGACCCAGCCAGCCCAGGCCCCAG GCACCCTACGCAGGGTCCCAGTGCCCACCAGCCACAGCGGCTCCTTGGCCCTGGGGCTCC CTCATCTGCCATCCCCCAAGCAGCGGGCCAAGTTCAAGAGGGTAGGCAAGGAGAAATGCC GCCCGGTGCTGGCCGGAGGTGGGGGCGGCTCTGCAGGCACCCCCCTGCAGCATTCATTCC TGACGGAGGTGACCGACGTCTATGAGATGGAGGGAGGGCTGCTGAACTTGCTCAATGACT TCCACTCAGGCCGGTTGCAGGCCTTCGGAAAGGAATGCTCCTTTGAGCAGTTGGAGCACG TGCGGGAGATGCAGGAGAAGCTGGCCCGGCTGCACTTCAGCCTGGACGTGTGTGGGGAGG AAGAGGAAGAGGAGGAAGAAGAGGACGGGGTCGCTGAGGGGCTGCCAGAGGAGCAGAAGA AGACCATGGCTGACCGCAACTTGGACCAGCTGCTCAGCAATCTGGAAGATCTTAGTAATT CTATACAGAAGCTGCACCTGGCCGAGAACACCGAGCCTGAGGAGCCATCAGCTGTGTAGT CGTCGGACCCAGGCCCAGACTGCCCCTTCTCATTCCTTTAAAACTGTGACTTTTTATGAG CTCGACTGGATGTTCCGCGGGCCCCCTCCAGGTGCTATGGGGGAGGGGGAACTGGATGGA ATTAAACCGGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGAAGCATCACTCCAGACCCCAAACCTCCAGGGCCTGAGGCCTAGCCAGCATCCAATGG AGGACAAAAAGAAGAAAAGGAGCCCCAAGCCCTGCCTGACCCAGCCAGCCCAGGCCCCAG GCACCCTACGCAGGGTCCCAGTGCCCACCAGCCACAGCGGCTCCTTGGCCCTGGGGCTCC CTCATCTGCCATCCCCCAAGCAGCGGGCCAAGTTCAAGAGGGTAGGCAAGGAGAAATGCC GCCCGGTGCTGGCCGGAGGTGGGGGCGGCTCTGCAGGCACCCCCCTGCAGCATTCATTCC TGACGGAGGTGACCGACGTCTATGAGATGGAGGGAGGGCTGCTGAACTTGCTCAATGACT TCCACTCAGGCCGGTTGCAGGCCTTCGGAAAGGAATGCTCCTTTGAGCAGTTGGAGCACG TGCGGGAGATGCAGGAGAAGCTGGCCCGGCTGCACTTCAGCCTGGACGTGTGTGGGGAGG AAGAGGAAGAGGAGGAAGAAGAGGACGGGGTCGCTGAGGGGCTGCCAGAGGAGCAGAAGA AGACCATGGCTGACCGCAACTTGGACCAGCTGCTCAGCAATCTGGAAGATCTTAGTAATT CTATACAGAAGCTGCACCTGGCCGAGAACACCGAGCCTGAGGAGCCATCAGCTGTGTAGT CGTCGGACCCAGGCCCAGACTGCCCCTTCTCATTCCTTTAAAACTGTGACTTTTTATGAG CTCGACTGGATGTTCCGCGGGCCCCCTCCAGGTGCTATGGGGGAGGGGGAACTGGATGGA ATTAAACCGGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 67-186, - strand, RNAz p=0.978776 | |
| 387-505, + strand, RNAz p=0.742421 | |
| 387-492, + strand, RNAz p=0.843925 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 67-186, - strand, RNAz p=0.978776 | |
| 387-505, + strand, RNAz p=0.742421 | |
| 387-492, + strand, RNAz p=0.843925 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 29-226, gnl|bosTau2|chr2 (73496513-73496709) | |
| 29-226, gnl|Hg17|chr1 (32336603-32336798) | |
| 29-226, gnl|Mm7|chr4 (129067439-129067242) | |
| 387-585, gnl|bosTau2|chr2 (73498112-73498310) | |
| 387-585, gnl|canFam2|chr2 (71894357-71894136) | |
| 387-585, gnl|danRer3|chr13 (34437569-34437395) | |
| 387-585, gnl|dasNov1|scaffold_3246 (34304-34083) | |
| 387-585, gnl|echTel1|scaffold_293599 (17801-17615) | |
| 387-585, gnl|fr1|chrUn (59903292-59903463) | |
| 387-585, gnl|galGal2|chr23 (4471688-4471528) | |
| 387-585, gnl|hg17|chr1 (32338869-32339094) | |
| 387-585, gnl|Hg17|chr1 (32338879-32339077) | |
| 387-585, gnl|mm7|chr4 (129065533-129065310) | |
| 387-585, gnl|Mm7|chr4 (129065524-129065326) | |
| 387-585, gnl|monDom2|scaffold_43 (7574563-7574362) | |
| 387-585, gnl|oryCun1|scaffold_195127 (9753-9969) | |
| 387-585, gnl|panTro1|chr1 (33097962-33098187) | |
| 387-585, gnl|rheMac2|chr1 (34960590-34960815) | |
| 387-585, gnl|rn3|chr1 (13275635-13275457) | |
| 387-585, gnl|tetNig1|chr10 (3716869-3717036) | |
| 605-792, gnl|bosTau2|chr2 (73499119-73499306) | |
| 605-792, gnl|Hg17|chr1 (32339888-32340072) | |
| 605-792, gnl|Mm7|chr4 (129064093-129063930) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 29-226, gnl|bosTau2|chr2 (73496513-73496709) | |
| 29-226, gnl|Hg17|chr1 (32336603-32336798) | |
| 29-226, gnl|Mm7|chr4 (129067439-129067242) | |
| 387-585, gnl|bosTau2|chr2 (73498112-73498310) | |
| 387-585, gnl|canFam2|chr2 (71894357-71894136) | |
| 387-585, gnl|danRer3|chr13 (34437569-34437395) | |
| 387-585, gnl|dasNov1|scaffold_3246 (34304-34083) | |
| 387-585, gnl|echTel1|scaffold_293599 (17801-17615) | |
| 387-585, gnl|fr1|chrUn (59903292-59903463) | |
| 387-585, gnl|galGal2|chr23 (4471688-4471528) | |
| 387-585, gnl|hg17|chr1 (32338869-32339094) | |
| 387-585, gnl|Hg17|chr1 (32338879-32339077) | |
| 387-585, gnl|mm7|chr4 (129065533-129065310) | |
| 387-585, gnl|Mm7|chr4 (129065524-129065326) | |
| 387-585, gnl|monDom2|scaffold_43 (7574563-7574362) | |
| 387-585, gnl|oryCun1|scaffold_195127 (9753-9969) | |
| 387-585, gnl|panTro1|chr1 (33097962-33098187) | |
| 387-585, gnl|rheMac2|chr1 (34960590-34960815) | |
| 387-585, gnl|rn3|chr1 (13275635-13275457) | |
| 387-585, gnl|tetNig1|chr10 (3716869-3717036) | |
| 605-792, gnl|bosTau2|chr2 (73499119-73499306) | |
| 605-792, gnl|Hg17|chr1 (32339888-32340072) | |
| 605-792, gnl|Mm7|chr4 (129064093-129063930) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fce (0.271592) | |
| mas (0.210305) | |
| fbs (0.175346) | |
| eli (0.151814) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| mas (0.210305) | |
| fbs (0.175346) | |
| eli (0.151814) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) |