Ss1.1-recc2803c_c8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGGTCTGTTGGTGCTCAGAGTGTGGCCAGGCGGCCTCGGACCGAGCAGGTTTTCCTTG CCAGTGGATTGTGTAGAATACACTGCCAGTCTCTTGTCTTCTATTCACCATGGCTTCTTC TGATATCCAGGTGAAGGAGCTGGAGAAGCGTGCCTCAGGCCAGGCTTTTGAGCTGATTCT CAGCCCTCGATCAAAAGAATCCGTCCCAGAATTCCCCCTTTCCCCTCCAAAGAAGAAGGA TCTTTCCCTGGAGGAAATTCAGAAGAAATTAGAAGCTGCAGAAGAAAGACGCAAGTCCCA TGAAGCTGAGGTCTTGAAGCAGCTTGCTGAGAAACGGGAGCACGAGAAGGAGGTGCTTCA GAAAGCAATCGAGGAGAACAACAATTTCAGTAAAATGGCGGAGGAGAAGCTGACCCACAA AATGGAAGCCAACAAAGAGAACCGAGAGGCGCAGATGGCCGCCAAGCTGGAACGTTTGCG GGAGAAGGACAAGCACATTGAAGAAGTGCGGAAGAACAAAGAATCCAAAGACCCTGCTGA TGAGACTGAAGCTGACTAATTTGTTCTGAGAACTGACTTTCTCCCCCTCCCCTTCCTAAA TATCCAAAGACTGTACTGGCCAGTGTCATTTTACTTTTGCCCTCCTGACAAATATTCTAG AAGCTGAGTAGGACTGTATAGGTAGATCCAGACTGTATGATGTTGTTTTAGGGGCTAAAG GGGAGAAACTGAAAGTGTTTTACTCTTTTTCTAAAGTGTTGAAGTCTTTCTAATGTAGCT ATTTTTCTTGTTGCATCTTTTCTACTTCAGTACACTTGGTGTACTGGGTTAATGGCTAGT ACTGTATTGGCTCTGTGAAAACATGTTTGTGAAAAGAGTATGTAGTGGCTTCTTTCAAAT TGTTAGATGCTGAATATCTGTTCACTTTTAAATCCCAATTCTGTCCCAATCTTACCAGAT GCTACTGTACTTGAATGGTTAATAAAACTGCACAGTGCTGTTGGTGGCAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGGTCTGTTGGTGCTCAGAGTGTGGCCAGGCGGCCTCGGACCGAGCAGGTTTTCCTTG CCAGTGGATTGTGTAGAATACACTGCCAGTCTCTTGTCTTCTATTCACCATGGCTTCTTC TGATATCCAGGTGAAGGAGCTGGAGAAGCGTGCCTCAGGCCAGGCTTTTGAGCTGATTCT CAGCCCTCGATCAAAAGAATCCGTCCCAGAATTCCCCCTTTCCCCTCCAAAGAAGAAGGA TCTTTCCCTGGAGGAAATTCAGAAGAAATTAGAAGCTGCAGAAGAAAGACGCAAGTCCCA TGAAGCTGAGGTCTTGAAGCAGCTTGCTGAGAAACGGGAGCACGAGAAGGAGGTGCTTCA GAAAGCAATCGAGGAGAACAACAATTTCAGTAAAATGGCGGAGGAGAAGCTGACCCACAA AATGGAAGCCAACAAAGAGAACCGAGAGGCGCAGATGGCCGCCAAGCTGGAACGTTTGCG GGAGAAGGACAAGCACATTGAAGAAGTGCGGAAGAACAAAGAATCCAAAGACCCTGCTGA TGAGACTGAAGCTGACTAATTTGTTCTGAGAACTGACTTTCTCCCCCTCCCCTTCCTAAA TATCCAAAGACTGTACTGGCCAGTGTCATTTTACTTTTGCCCTCCTGACAAATATTCTAG AAGCTGAGTAGGACTGTATAGGTAGATCCAGACTGTATGATGTTGTTTTAGGGGCTAAAG GGGAGAAACTGAAAGTGTTTTACTCTTTTTCTAAAGTGTTGAAGTCTTTCTAATGTAGCT ATTTTTCTTGTTGCATCTTTTCTACTTCAGTACACTTGGTGTACTGGGTTAATGGCTAGT ACTGTATTGGCTCTGTGAAAACATGTTTGTGAAAAGAGTATGTAGTGGCTTCTTTCAAAT TGTTAGATGCTGAATATCTGTTCACTTTTAAATCCCAATTCTGTCCCAATCTTACCAGAT GCTACTGTACTTGAATGGTTAATAAAACTGCACAGTGCTGTTGGTGGCAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 122-236, + strand, RNAz p=0.590006 | |
| 144-370, - strand, RNAz p=0.98858 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 122-236, + strand, RNAz p=0.590006 | |
| 144-370, - strand, RNAz p=0.98858 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 50-1020, gnl|bosTau2|chr3 (54546244-54547182) | |
| 50-1020, gnl|Hg17|chr1 (25915371-25911191) | |
| 50-1020, gnl|Mm7|chr4 (69359837-69358883) | |
| 122-295, gnl|bosTau2|chr2 (79916841-79917014) | |
| 122-295, gnl|canFam2|chr2 (76931129-76930942) | |
| 122-295, gnl|danRer3|chr20 (43537345-43537528) | |
| 122-295, gnl|dasNov1|scaffold_10145 (152-339) | |
| 122-295, gnl|echTel1|scaffold_285652 (67182-67027) | |
| 122-295, gnl|fr1|chrUn (97496439-97496259) | |
| 122-295, gnl|galGal2|chr23 (2813685-2813509) | |
| 122-295, gnl|hg17|chr1 (25914275-25914462) | |
| 122-295, gnl|Hg17|chr1 (25914447-25914274) | |
| 122-295, gnl|loxAfr1|scaffold_66227 (11351-11178) | |
| 122-295, gnl|mm7|chr4 (133849277-133849090) | |
| 122-295, gnl|Mm7|chr4 (133849103-133849276) | |
| 122-295, gnl|monDom2|scaffold_91 (3255534-3255732) | |
| 122-295, gnl|oryCun1|scaffold_117752 (1477-1304) | |
| 122-295, gnl|panTro1|chr1 (26594054-26594241) | |
| 122-295, gnl|rheMac2|chr1 (28510100-28510287) | |
| 122-295, gnl|rn3|chr5 (153238840-153238653) | |
| 122-295, gnl|tetNig1|chr8 (5622671-5622493) | |
| 122-295, gnl|xenTro1|scaffold_391 (35263-35442) | |
| 394-943, gnl|bosTau2|chr11 (3371202-3370656) | |
| 394-943, gnl|Hg17|chr2 (97029055-97029598) | |
| 394-943, gnl|Mm7|chr1 (36866648-36867138) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 50-1020, gnl|bosTau2|chr3 (54546244-54547182) | |
| 50-1020, gnl|Hg17|chr1 (25915371-25911191) | |
| 50-1020, gnl|Mm7|chr4 (69359837-69358883) | |
| 122-295, gnl|bosTau2|chr2 (79916841-79917014) | |
| 122-295, gnl|canFam2|chr2 (76931129-76930942) | |
| 122-295, gnl|danRer3|chr20 (43537345-43537528) | |
| 122-295, gnl|dasNov1|scaffold_10145 (152-339) | |
| 122-295, gnl|echTel1|scaffold_285652 (67182-67027) | |
| 122-295, gnl|fr1|chrUn (97496439-97496259) | |
| 122-295, gnl|galGal2|chr23 (2813685-2813509) | |
| 122-295, gnl|hg17|chr1 (25914275-25914462) | |
| 122-295, gnl|Hg17|chr1 (25914447-25914274) | |
| 122-295, gnl|loxAfr1|scaffold_66227 (11351-11178) | |
| 122-295, gnl|mm7|chr4 (133849277-133849090) | |
| 122-295, gnl|Mm7|chr4 (133849103-133849276) | |
| 122-295, gnl|monDom2|scaffold_91 (3255534-3255732) | |
| 122-295, gnl|oryCun1|scaffold_117752 (1477-1304) | |
| 122-295, gnl|panTro1|chr1 (26594054-26594241) | |
| 122-295, gnl|rheMac2|chr1 (28510100-28510287) | |
| 122-295, gnl|rn3|chr5 (153238840-153238653) | |
| 122-295, gnl|tetNig1|chr8 (5622671-5622493) | |
| 122-295, gnl|xenTro1|scaffold_391 (35263-35442) | |
| 394-943, gnl|bosTau2|chr11 (3371202-3370656) | |
| 394-943, gnl|Hg17|chr2 (97029055-97029598) | |
| 394-943, gnl|Mm7|chr1 (36866648-36867138) |
| Expressed library(ies): 50 entry(ies) | More info |
| Expressed library(ies): 50 entry(ies) | Help | Less info |
| ece (6.19124) | |
| ecc (6.09686) | |
| ebs (3.07583) | |
| fce (2.71592) | |
| eye (2.21654) | |
| fcc (1.78006) | |
| fty (1.7584) | |
| med (1.74378) | |
| thg (1.3947) | |
| ese (1.26502) | |
| elu (1.15607) | |
| eep (1.10308) | |
| fhi (1.01747) | |
| hyp (0.999857) | |
| spl (0.859107) | |
| eru (0.720288) | |
| pgl (0.7109) | |
| fbs (0.701385) | |
| nmm (0.664011) | |
| eje (0.593003) | |
| spc (0.566829) | |
| ill (0.526778) | |
| nje (0.49776) | |
| cag (0.453583) | |
| pty (0.428143) | |
| tes (0.415628) | |
| nca (0.410621) | |
| cov (0.396458) | |
| ova (0.387397) | |
| csp (0.322373) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| lnt (0.284616) | |
| hlv (0.278513) | |
| ssp (0.271039) | |
| pla (0.267344) | |
| mgp (0.230681) | |
| jca (0.22792) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| rec (0.17307) | |
| eli (0.151814) | |
| lin (0.145603) | |
| ute (0.132784) | |
| ret (0.128733) | |
| sug (0.127291) | |
| cly (0.120642) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 50 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (6.19124) | |
| ecc (6.09686) | |
| ebs (3.07583) | |
| fce (2.71592) | |
| eye (2.21654) | |
| fcc (1.78006) | |
| fty (1.7584) | |
| med (1.74378) | |
| thg (1.3947) | |
| ese (1.26502) | |
| elu (1.15607) | |
| eep (1.10308) | |
| fhi (1.01747) | |
| hyp (0.999857) | |
| spl (0.859107) | |
| eru (0.720288) | |
| pgl (0.7109) | |
| fbs (0.701385) | |
| nmm (0.664011) | |
| eje (0.593003) | |
| spc (0.566829) | |
| ill (0.526778) | |
| nje (0.49776) | |
| cag (0.453583) | |
| pty (0.428143) | |
| tes (0.415628) | |
| nca (0.410621) | |
| cov (0.396458) | |
| ova (0.387397) | |
| csp (0.322373) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| lnt (0.284616) | |
| hlv (0.278513) | |
| ssp (0.271039) | |
| pla (0.267344) | |
| mgp (0.230681) | |
| jca (0.22792) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| rec (0.17307) | |
| eli (0.151814) | |
| lin (0.145603) | |
| ute (0.132784) | |
| ret (0.128733) | |
| sug (0.127291) | |
| cly (0.120642) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |