Ss1.1-recc2803c_e10.5.5
|
GAGCGGAGAGAGTGAGGAGGCTGCGTCTGGCTCCCGCTCTCACAGCCATTGCAGTACATT
GAGCTCCATAGAGACAGCGCCGGGGCAAGTGAGAGCCGGACGGGCACTGGGCGACTCTGT
GCCTCGCTGAGGAAAAATAATTAAACATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCA
AAATGTCATCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCATAAGAAGAAGCACC
CAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAAAGGTGGAAGACCA
TGTCTGCTAAAGAGAAAGGAAAATTTGAAGACATGGCAAAGGCGGACAAGGCCCGTTATG
AAAGAGAAATGAAAACTTACATACCTCCTAAAGGGGAGACAAAAAAGAAGTTCAAGGATC
CCAATGCACCCAAGAGGCCTCCTTCGGCCTTTTTCTTGTTTTGTTCTGAGTATCGTCCAA
AAATCAAAGGAGAGCATCCTGGCCTATCCATTGGTGATGTTGCAAAGAAACTGGGAGAGA
TGTGGAATAACACCGCTGCAGATGACAAGCAGCCTTATGAAAAGAAGGCTGCTAAGCTGA
AGGAGAAGTACGAAAAGGATATTGCTGCATACCGAGCTAAAGGGAAGCCTGATGCAGCAA
AAAAGGGAGTCGTCAAGGCTGAGAAAAGCAAGAAAAAGAAGGAAGAGGAGGAAGATGAGG
AAGATGAAGAGGATGAGGAGGAGGAGGAGGACGAAGAGGATGAGGAGGAAGAAGAAGATG
ATGATGATGAATAAGTTGGTTCTAGCGCAGTTTTTTTTTCTTGTCTATAAAGCATTTAAC
CCCCCTGTACACAACTCACTCCTTTTAAAGAAAAAAAATTGAAATGTAAGGCTGTGTAAG
ATTTGTTTTTAAACTGTACAGTGTCTTTTTTTGTATAGTTAACACACTACCGAATGTGTC
TTTAGATAGCCCTGTCCTGGTGGTATTTTCAATAGCCACTAACCTTGCCTGGTACAGTAT
GGGGGTTGTAAATTGGCATGGAAATTTAAAGCAGGTTCTTGTTGGTGCACAGCACAAATT
AGTTATATATGGGGTTGGTAGTTTTTTCATCTTCAGTTGTCTCTGATGCAGCTTATACGA
AATAATTGTTGTTCTGTTAACTGAATACCACTCTGTAATTGCAAAAAAAGAAAAAAAGTT
GCAGCTGTTTTGTTGACATTCTGAATGCTTCTAAGTAAATACAATTTTTTTTATTAAAAA
AAAAAAAAAAAACATAGGTCTGAAATTTTTCTTCTTAAGGGGAGGCTAGTCTTTTGCTTT
TGCCCATTTTGGATCACACGAATTATTACAGTGTTTATCTTTCATATAGTTTAGCTGATA
AAAAGCTTTTGTCTATACACCCTGCATACTCATGACGAGGGTAATAAAAGTTGGAATTGA
GACAGTTTCATCCATAACTGAAACTCAAATCTTGATCGGTTGATAATCAGATTTCACCTA
GCCCAGTTACATTTACAAAGTGAAGAGTAACATATCTACTCACAGCATGGGATTATTAGA
ATCAAACATTTTGAAAGTCTGTCCTTGAAGGACTAATAGAAAAGTATGTTCTAATCTTTA
CATGAGGACTCTACATTCTTTAACTCCCATTACCATGTAATGGCAGTTATATTTGCAGTT
CCCAAGTTAAAGACCTGAGAATGTATCCCCAAAAGCGTGAGATTAAAATACAAGACGGCC
GTGTTATGTTTTTTTGTTGACATTAGTCCCAGCAAAGCTCTGGGGAAAAAAAAAGTGCTG
GCTGTAAATGTCTTCTCCTGTTATCTAAATATGGATTGTTGAGGAAACTTGAGACCCACC
ATTAAAGGTATTTTTAATTAATTGGGCCAACTTTTAGAACTGTATACCACATTTTAAACC
AGGTATATTTTCCTATATCATGGTTTGCCCCTGTATAAACCAAAATAGACATGAGGGAAG
AAGACACTTAAACTTTGTATCTCAGTATGAATTATCTGATTTATTTGAATTTGATTTTTC
TTTACAAAAGTCAAGCTCATTCATTAGGGTCATATGTTTATCTGCTTAACAGTGTAGGGA
ACAATTTGGCAATTTTGTGGTTTTCGAGATTATCGTTCTCTTAAAGTGCCAGTGTTTTAA
AATAGCGTTCTTGTAATTTTACACGCTTTTGTGATGGAGTGCTGTTTTGTTATATAATTT
TGACTTGGATTCTTTCCATTTGCATTTGTTTATGTAATTTCAGGAGGAATACTGAACATC
TGAGTCCTGGATGATACTAATAAACTAATAATTGCAGAGGTTTTAAATATTAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGCGGAGAGAGTGAGGAGGCTGCGTCTGGCTCCCGCTCTCACAGCCATTGCAGTACATT
GAGCTCCATAGAGACAGCGCCGGGGCAAGTGAGAGCCGGACGGGCACTGGGCGACTCTGT
GCCTCGCTGAGGAAAAATAATTAAACATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCA
AAATGTCATCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCATAAGAAGAAGCACC
CAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAAAGGTGGAAGACCA
TGTCTGCTAAAGAGAAAGGAAAATTTGAAGACATGGCAAAGGCGGACAAGGCCCGTTATG
AAAGAGAAATGAAAACTTACATACCTCCTAAAGGGGAGACAAAAAAGAAGTTCAAGGATC
CCAATGCACCCAAGAGGCCTCCTTCGGCCTTTTTCTTGTTTTGTTCTGAGTATCGTCCAA
AAATCAAAGGAGAGCATCCTGGCCTATCCATTGGTGATGTTGCAAAGAAACTGGGAGAGA
TGTGGAATAACACCGCTGCAGATGACAAGCAGCCTTATGAAAAGAAGGCTGCTAAGCTGA
AGGAGAAGTACGAAAAGGATATTGCTGCATACCGAGCTAAAGGGAAGCCTGATGCAGCAA
AAAAGGGAGTCGTCAAGGCTGAGAAAAGCAAGAAAAAGAAGGAAGAGGAGGAAGATGAGG
AAGATGAAGAGGATGAGGAGGAGGAGGAGGACGAAGAGGATGAGGAGGAAGAAGAAGATG
ATGATGATGAATAAGTTGGTTCTAGCGCAGTTTTTTTTTCTTGTCTATAAAGCATTTAAC
CCCCCTGTACACAACTCACTCCTTTTAAAGAAAAAAAATTGAAATGTAAGGCTGTGTAAG
ATTTGTTTTTAAACTGTACAGTGTCTTTTTTTGTATAGTTAACACACTACCGAATGTGTC
TTTAGATAGCCCTGTCCTGGTGGTATTTTCAATAGCCACTAACCTTGCCTGGTACAGTAT
GGGGGTTGTAAATTGGCATGGAAATTTAAAGCAGGTTCTTGTTGGTGCACAGCACAAATT
AGTTATATATGGGGTTGGTAGTTTTTTCATCTTCAGTTGTCTCTGATGCAGCTTATACGA
AATAATTGTTGTTCTGTTAACTGAATACCACTCTGTAATTGCAAAAAAAGAAAAAAAGTT
GCAGCTGTTTTGTTGACATTCTGAATGCTTCTAAGTAAATACAATTTTTTTTATTAAAAA
AAAAAAAAAAAACATAGGTCTGAAATTTTTCTTCTTAAGGGGAGGCTAGTCTTTTGCTTT
TGCCCATTTTGGATCACACGAATTATTACAGTGTTTATCTTTCATATAGTTTAGCTGATA
AAAAGCTTTTGTCTATACACCCTGCATACTCATGACGAGGGTAATAAAAGTTGGAATTGA
GACAGTTTCATCCATAACTGAAACTCAAATCTTGATCGGTTGATAATCAGATTTCACCTA
GCCCAGTTACATTTACAAAGTGAAGAGTAACATATCTACTCACAGCATGGGATTATTAGA
ATCAAACATTTTGAAAGTCTGTCCTTGAAGGACTAATAGAAAAGTATGTTCTAATCTTTA
CATGAGGACTCTACATTCTTTAACTCCCATTACCATGTAATGGCAGTTATATTTGCAGTT
CCCAAGTTAAAGACCTGAGAATGTATCCCCAAAAGCGTGAGATTAAAATACAAGACGGCC
GTGTTATGTTTTTTTGTTGACATTAGTCCCAGCAAAGCTCTGGGGAAAAAAAAAGTGCTG
GCTGTAAATGTCTTCTCCTGTTATCTAAATATGGATTGTTGAGGAAACTTGAGACCCACC
ATTAAAGGTATTTTTAATTAATTGGGCCAACTTTTAGAACTGTATACCACATTTTAAACC
AGGTATATTTTCCTATATCATGGTTTGCCCCTGTATAAACCAAAATAGACATGAGGGAAG
AAGACACTTAAACTTTGTATCTCAGTATGAATTATCTGATTTATTTGAATTTGATTTTTC
TTTACAAAAGTCAAGCTCATTCATTAGGGTCATATGTTTATCTGCTTAACAGTGTAGGGA
ACAATTTGGCAATTTTGTGGTTTTCGAGATTATCGTTCTCTTAAAGTGCCAGTGTTTTAA
AATAGCGTTCTTGTAATTTTACACGCTTTTGTGATGGAGTGCTGTTTTGTTATATAATTT
TGACTTGGATTCTTTCCATTTGCATTTGTTTATGTAATTTCAGGAGGAATACTGAACATC
TGAGTCCTGGATGATACTAATAAACTAATAATTGCAGAGGTTTTAAATATTAAAAAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
48-213, gnl|bosTau2|chr19 (6151535-6151691) |
|
48-213, gnl|Mm7|chr12 (49422253-49422418) |
| |
|
276-1270, gnl|bosTau2|chr16 (17738547-17737573) |
|
276-1270, gnl|Mm7|chr15 (74174751-74173797) |
| |
|
646-942, gnl|bosTau2|chr15 (19656654-19656367) |
|
646-942, gnl|Hg17|chr11 (17704731-17705018) |
|
646-942, gnl|Mm7|chr2 (106777486-106777192) |
| |
|
952-1243, gnl|bosTau2|chr15 (19654541-19654254) |
|
952-1243, gnl|Hg17|chr11 (17707601-17707882) |
|
952-1243, gnl|Mm7|chr2 (106770954-106770614) |
| |
|
1275-1605, gnl|bosTau2|chr5 (21064287-21064615) |
|
1275-1605, gnl|Hg17|chr15 (69243683-69243360) |
|
1275-1605, gnl|Mm7|chr12 (49423507-49423813) |
| |
|
1725-2350, gnl|bosTau2|chr3 (39080285-39079676) |
|
1725-2350, gnl|Hg17|chr15 (69243238-69242643) |
|
1725-2350, gnl|Mm7|chr8 (4681957-4682510) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
48-213, gnl|bosTau2|chr19 (6151535-6151691) |
|
48-213, gnl|Mm7|chr12 (49422253-49422418) |
| |
|
276-1270, gnl|bosTau2|chr16 (17738547-17737573) |
|
276-1270, gnl|Mm7|chr15 (74174751-74173797) |
| |
|
646-942, gnl|bosTau2|chr15 (19656654-19656367) |
|
646-942, gnl|Hg17|chr11 (17704731-17705018) |
|
646-942, gnl|Mm7|chr2 (106777486-106777192) |
| |
|
952-1243, gnl|bosTau2|chr15 (19654541-19654254) |
|
952-1243, gnl|Hg17|chr11 (17707601-17707882) |
|
952-1243, gnl|Mm7|chr2 (106770954-106770614) |
| |
|
1275-1605, gnl|bosTau2|chr5 (21064287-21064615) |
|
1275-1605, gnl|Hg17|chr15 (69243683-69243360) |
|
1275-1605, gnl|Mm7|chr12 (49423507-49423813) |
| |
|
1725-2350, gnl|bosTau2|chr3 (39080285-39079676) |
|
1725-2350, gnl|Hg17|chr15 (69243238-69242643) |
|
1725-2350, gnl|Mm7|chr8 (4681957-4682510) |
|
thg (4.1841) |
|
spl (3.00687) |
|
fty (1.93424) |
|
elu (1.54143) |
|
lnt (1.42308) |
|
sin (1.39958) |
|
med (1.39502) |
|
vin (1.33023) |
|
sug (1.27291) |
|
cty (1.24896) |
|
nbm (1.1919) |
|
ova (1.16219) |
|
mgp (1.1534) |
|
ecc (1.15035) |
|
ese (1.13852) |
|
spc (1.13366) |
|
nep (1.10355) |
|
tbr (1.07925) |
|
clu (1.07681) |
|
ldo (1.06703) |
|
bfe (1.049) |
|
mcp (1.02389) |
|
fhi (1.01747) |
|
nco (0.970403) |
|
ski (0.880411) |
|
cte (0.87822) |
|
eye (0.852515) |
|
eru (0.840336) |
|
amn (0.835422) |
|
fce (0.814775) |
|
lun (0.752445) |
|
cmu (0.745573) |
|
tra (0.738552) |
|
liv (0.731422) |
|
sag (0.730861) |
|
lin (0.728014) |
|
ill (0.702371) |
|
ece (0.687916) |
|
pla (0.66836) |
|
tes (0.623441) |
|
hea (0.613497) |
|
sme (0.610874) |
|
isp (0.601504) |
|
eje (0.593003) |
|
nlu (0.575043) |
|
lyg (0.532411) |
|
nmm (0.531209) |
|
ton (0.526501) |
|
kid (0.518941) |
|
ret (0.514933) |
|
pro (0.512033) |
|
bla (0.497389) |
|
eep (0.490256) |
|
cbe (0.478469) |
|
fco (0.471624) |
|
jca (0.45584) |
|
eli (0.455443) |
|
fat (0.442282) |
|
csk (0.422238) |
|
mas (0.42061) |
|
che (0.408942) |
|
ute (0.398353) |
|
fcc (0.39557) |
|
mgm (0.360685) |
|
gul (0.355177) |
|
rec (0.346141) |
|
cki (0.330469) |
|
mga (0.32041) |
|
hyp (0.285673) |
|
ssp (0.271039) |
|
pgl (0.236967) |
|
nms (0.213858) |
|
jej (0.197844) |
|
aor (0.195274) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
nje (0.16592) |
|
csp (0.161186) |
|
cag (0.151194) |
|
pty (0.142714) |
|
nca (0.136874) |
|
ste (0.135208) |
|
cbr (0.127975) |
|
cly (0.120642) |
|
ebs (0.118301) |
|
cbl (0.114797) |
|
thg (4.1841) |
|
spl (3.00687) |
|
fty (1.93424) |
|
elu (1.54143) |
|
lnt (1.42308) |
|
sin (1.39958) |
|
med (1.39502) |
|
vin (1.33023) |
|
sug (1.27291) |
|
cty (1.24896) |
|
nbm (1.1919) |
|
ova (1.16219) |
|
mgp (1.1534) |
|
ecc (1.15035) |
|
ese (1.13852) |
|
spc (1.13366) |
|
nep (1.10355) |
|
tbr (1.07925) |
|
clu (1.07681) |
|
ldo (1.06703) |
|
bfe (1.049) |
|
mcp (1.02389) |
|
fhi (1.01747) |
|
nco (0.970403) |
|
ski (0.880411) |
|
cte (0.87822) |
|
eye (0.852515) |
|
eru (0.840336) |
|
amn (0.835422) |
|
fce (0.814775) |
|
lun (0.752445) |
|
cmu (0.745573) |
|
tra (0.738552) |
|
liv (0.731422) |
|
sag (0.730861) |
|
lin (0.728014) |
|
ill (0.702371) |
|
ece (0.687916) |
|
pla (0.66836) |
|
tes (0.623441) |
|
hea (0.613497) |
|
sme (0.610874) |
|
isp (0.601504) |
|
eje (0.593003) |
|
nlu (0.575043) |
|
lyg (0.532411) |
|
nmm (0.531209) |
|
ton (0.526501) |
|
kid (0.518941) |
|
ret (0.514933) |
|
pro (0.512033) |
|
bla (0.497389) |
|
eep (0.490256) |
|
cbe (0.478469) |
|
fco (0.471624) |
|
jca (0.45584) |
|
eli (0.455443) |
|
fat (0.442282) |
|
csk (0.422238) |
|
mas (0.42061) |
|
che (0.408942) |
|
ute (0.398353) |
|
fcc (0.39557) |
|
mgm (0.360685) |
|
gul (0.355177) |
|
rec (0.346141) |
|
cki (0.330469) |
|
mga (0.32041) |
|
hyp (0.285673) |
|
ssp (0.271039) |
|
pgl (0.236967) |
|
nms (0.213858) |
|
jej (0.197844) |
|
aor (0.195274) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
nje (0.16592) |
|
csp (0.161186) |
|
cag (0.151194) |
|
pty (0.142714) |
|
nca (0.136874) |
|
ste (0.135208) |
|
cbr (0.127975) |
|
cly (0.120642) |
|
ebs (0.118301) |
|
cbl (0.114797) |
