Non-Coding RNA Search

Ss1.1-recc2803c_e7.5

Sequence:


               
               GTGGTGTGGAGGCCACACCATGCCGCGCCGCGGGGCCGCCTCCGTGCTGCTGTTGCTGCT
GCTGCTGCTGGGGGCAGCCACGGCAGCCCCCCTGTCCCCGAGACCCTCCAAGGAGGAGCT
GACCCGCTGTGTGGCAGAGGTGGTCACAGAAGTGCTGATGCTGGGCCAAGCCAGGCAAGG
CCCCTGCGTGGCCCTCCTCCGCAAAGAAATGTGTGAGACCGAGCCCTACGGCTGTGGGGC
CACTGAAGAGACAGGCCTCCTGGTTGGGGATTTGAAAAAGCAAGAGCCTGGGAGGACAAG
GTCCAGCCAGGAGGCGAGGGACAAGGAAGAGGAAGAAGCCACAGAAAGGACCCACACATC
TGAGGTGCGGGAGCAGGCCATCCGCGAGCAGCTCCACAGCCGGCTCCGCCAGGAGGACCA
CGAGGAGGAGGAGGGGAAGAGGGGGCCCTTGGAGACCTTTGAGGGCCTGTGGAAGCAGCG
TCCAGAGGGTGGGGAGGGGCCCCAGAAGCGGGTGGCAGAGCAAGCTTGTGATGAGGAGAC
GGCCCAGTTTGAGGCAGAGGAGAAGGGGGTGCAGGTGCTGGGCGGAGGCCGCAGCCTGTG
GCAGGAGCCCCACGCGGGTGGAGGAGAGAGGCACGAGGACCACCAGCGCCTCCGCCAGCT
GGAAGGTGAGCGCCAGCAGGAGAAGGAAGACGCCTCAGACAGGGAGGAGCATGATGCGGC
GCGGCTGGGGCGCATGAGAGAGGAGCTGAAGAAGGTGACGGAGATGCTGGGGGAGGAGCT
CAGGAGGGAGGGCTGACCCCTGACCTCCTGTTCCCCTTCGTCCCGACACCCTCTGGCTCA
GGACTTCGGACCCCCAAAGCTGCCCCCCCAACCTGTCGGCCCACTCCGCTCCCCAGCCCA
CAGCAGTGGGGAGAAGGATATGCCTTGGAACCAGGCCTGGGGGCCCCAGCGCCAGCTGAG
TAGAGGGGCTGGGCTCCGACCGCCTCAGGAAACAGCCCTGACACCCGCCGAACCCACTGC
AACCCCAACCCTCCCGCACGAATAAAGCACAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTGTGGAGGCCACACCATGCCGCGCCGCGGGGCCGCCTCCGTGCTGCTGTTGCTGCT
GCTGCTGCTGGGGGCAGCCACGGCAGCCCCCCTGTCCCCGAGACCCTCCAAGGAGGAGCT
GACCCGCTGTGTGGCAGAGGTGGTCACAGAAGTGCTGATGCTGGGCCAAGCCAGGCAAGG
CCCCTGCGTGGCCCTCCTCCGCAAAGAAATGTGTGAGACCGAGCCCTACGGCTGTGGGGC
CACTGAAGAGACAGGCCTCCTGGTTGGGGATTTGAAAAAGCAAGAGCCTGGGAGGACAAG
GTCCAGCCAGGAGGCGAGGGACAAGGAAGAGGAAGAAGCCACAGAAAGGACCCACACATC
TGAGGTGCGGGAGCAGGCCATCCGCGAGCAGCTCCACAGCCGGCTCCGCCAGGAGGACCA
CGAGGAGGAGGAGGGGAAGAGGGGGCCCTTGGAGACCTTTGAGGGCCTGTGGAAGCAGCG
TCCAGAGGGTGGGGAGGGGCCCCAGAAGCGGGTGGCAGAGCAAGCTTGTGATGAGGAGAC
GGCCCAGTTTGAGGCAGAGGAGAAGGGGGTGCAGGTGCTGGGCGGAGGCCGCAGCCTGTG
GCAGGAGCCCCACGCGGGTGGAGGAGAGAGGCACGAGGACCACCAGCGCCTCCGCCAGCT
GGAAGGTGAGCGCCAGCAGGAGAAGGAAGACGCCTCAGACAGGGAGGAGCATGATGCGGC
GCGGCTGGGGCGCATGAGAGAGGAGCTGAAGAAGGTGACGGAGATGCTGGGGGAGGAGCT
CAGGAGGGAGGGCTGACCCCTGACCTCCTGTTCCCCTTCGTCCCGACACCCTCTGGCTCA
GGACTTCGGACCCCCAAAGCTGCCCCCCCAACCTGTCGGCCCACTCCGCTCCCCAGCCCA
CAGCAGTGGGGAGAAGGATATGCCTTGGAACCAGGCCTGGGGGCCCCAGCGCCAGCTGAG
TAGAGGGGCTGGGCTCCGACCGCCTCAGGAAACAGCCCTGACACCCGCCGAACCCACTGC
AACCCCAACCCTCCCGCACGAATAAAGCACAAAGAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               228-344, + strand, RNAz p=0.764544
               

               
               422-615, - strand, RNAz p=0.952275
               

               
               644-748, - strand, RNAz p=0.76771

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               228-344, + strand, RNAz p=0.764544
               

               
               422-615, - strand, RNAz p=0.952275
               

               
               644-748, - strand, RNAz p=0.76771

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               192-748, gnl|bosTau2|chr18 (42099066-42098502)
               

               
               192-748, gnl|Hg17|chr19 (44093580-44092985)
               

               
               192-748, gnl|Mm7|chr7 (25691159-25691728)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               192-748, gnl|bosTau2|chr18 (42099066-42098502)
               

               
               192-748, gnl|Hg17|chr19 (44093580-44092985)
               

               
               192-748, gnl|Mm7|chr7 (25691159-25691728)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               eep (0.61282)
               

               
               eru (0.360144)
               

               
               fce (0.271592)
               

               
               eye (0.170503)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.61282)
               

               
               eru (0.360144)
               

               
               fce (0.271592)
               

               
               eye (0.170503)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

	228-344, + strand, RNAz p=0.764544
	422-615, - strand, RNAz p=0.952275
	644-748, - strand, RNAz p=0.76771

	192-748, gnl\|bosTau2\|chr18 (42099066-42098502)
	192-748, gnl\|Hg17\|chr19 (44093580-44092985)
	192-748, gnl\|Mm7\|chr7 (25691159-25691728)

	eep (0.61282)
	eru (0.360144)
	fce (0.271592)
	eye (0.170503)
	ese (0.126502)
	ecc (0.115035)