Non-Coding RNA Search

Ss1.1-recc2803c_j4.5

Sequence:


               
               GGCAGGGCGGGGCCGCGGAGCAGCGGGTGGCGGCGGAGGAAGTCCCGGAACGCGACCTCG
CTCCCCTCGGGGTCTCGCTTGGGCCTCGGCGGGGTCCCGGGATCGCCAGGACTTTTGCAC
GCAGCCATGGGCGGCGTCGGGGAGCCCGGCGGGAGACCCGCGCAGCTGGGGGTGCCGCTG
CCCACCTTCCGCTGGGAGCAGATCCGCCCGCACAACCTGCCGGGCGACAAGTGGCTGGTC
ATCGAGCGTCGCGTCTACGACATCAGCCGCTGGGCACAGCGGCATCCGGGGGGCAGCCGC
CTCATCGGTCACCACGGCGCGGAGGATGCCACGGATGCCTTCCACGCCTTCCACCAGGAC
CTCAGTTTTGTGCGCAAGTTCCTGCAGCCCCTGCTGATTGGAGAGCTGGCCCCGGAGGAG
CCCAGCCAGGATGGACCTCAGAATGCCCAGCTGGTCGAGGACTTCCGAGCCCTGCGCCAG
GCAGTTGAGGACATGAAACTCTTTGAGGCCGACCCCGTCTTCTTTGCTCTCCTGCTGGGC
CACATCCTGGCCATGGAGGTCCTCGCCTGGCTTATCATCTACCTCCTCGGCCCCGGCTGG
GTGCCCAGCACCCTCGCCGCCTTCATCCTGGCCATCTCCCAGGCCCAGAGCTGGTGTCTG
CAACACGACCTGGGCCACATCTCCATCTTCAGGAAGTCCTGGTGGAACCACTTGGCCCAG
CAGTTCGTGATGGGGCAGCTGAAGGGTTTCTCTGCCCACTGGTGGAACTTCCGCCACTTC
CAGCACCACGCCAAGCCCAACATCTTCCACAAGGACCCAGACGTGACCGTGGCACCTGTC
TTCCTCCTGGGGGAGTCATCCATCGAGTACGGCCAGAAGAAGCGGAGATACTTACCCTAC
AACCACCAGCACCTCTACTTCTTCCTGATCGGCCCGCCTCTGCTCACGCTGGTGAACTTC
GAAGTGGAAAATCTGGCATACATGCTGGTGTGCCTGCAGTGGACGGACTTGCTCTGGGCT
GCCAGCTTCTACATCCGCTTCTTCTTATCCTACATCCCCCTGTACGGCGTTCCTGGGGCG
CTGCTCCTCTTCGTGGCTGTCAGGGTCCTGGAGAGCCACTGGTTCGTGTGGATCACACAG
ATGAACCACATCCCCAAGGAGATCGGCCACGAAAAGCACCGGGACTGGGCCAGTTCCCAG
TTGGCAGCCACCTGCAACGTGGAGCCCTCCCTCTTCATCGACTGGTTCAGCGGACACCTC
AACTTCCAGATCGAGCACCACCTCTTCCCCACGATGCCAAGGCACAACTACCGCAGGGTG
GCCCCGCTGGTCAAGGCGTTGTGTGCCAAGCACGGCCTCAGCTACGAGGTGAAGCCCTTC
CTCACCGCCCTGGTGGACATCATTAGGTCCCTGAAGAAGTCTGGCAACGTGTGGCTGGAA
GCCTACCTCCACCAGTGAAGGCAGCACCCAGGACCCTGGCAGCCACCAAGCCGCCCGGAT
GCTCCCCAGCTGCACCCCCCCACACACACCCCGGCACGCCCTCCCCTGTCTGCTCCACAG
CCCTAAGGCCAGCGCCCTCAACCCAAGAGGCCCAGAGCTAGGGGGGTGGTGTATACAGCC
ACGTGGTGAGCATGGCATGTTTTCCTAGAGCAAAAAAAATAGGGGAAGATGTTATTTTTA
TATAAAAACAAACCCAGATATGTTATGGAGTATTGAATTGGCAAGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGGGCGGGGCCGCGGAGCAGCGGGTGGCGGCGGAGGAAGTCCCGGAACGCGACCTCG
CTCCCCTCGGGGTCTCGCTTGGGCCTCGGCGGGGTCCCGGGATCGCCAGGACTTTTGCAC
GCAGCCATGGGCGGCGTCGGGGAGCCCGGCGGGAGACCCGCGCAGCTGGGGGTGCCGCTG
CCCACCTTCCGCTGGGAGCAGATCCGCCCGCACAACCTGCCGGGCGACAAGTGGCTGGTC
ATCGAGCGTCGCGTCTACGACATCAGCCGCTGGGCACAGCGGCATCCGGGGGGCAGCCGC
CTCATCGGTCACCACGGCGCGGAGGATGCCACGGATGCCTTCCACGCCTTCCACCAGGAC
CTCAGTTTTGTGCGCAAGTTCCTGCAGCCCCTGCTGATTGGAGAGCTGGCCCCGGAGGAG
CCCAGCCAGGATGGACCTCAGAATGCCCAGCTGGTCGAGGACTTCCGAGCCCTGCGCCAG
GCAGTTGAGGACATGAAACTCTTTGAGGCCGACCCCGTCTTCTTTGCTCTCCTGCTGGGC
CACATCCTGGCCATGGAGGTCCTCGCCTGGCTTATCATCTACCTCCTCGGCCCCGGCTGG
GTGCCCAGCACCCTCGCCGCCTTCATCCTGGCCATCTCCCAGGCCCAGAGCTGGTGTCTG
CAACACGACCTGGGCCACATCTCCATCTTCAGGAAGTCCTGGTGGAACCACTTGGCCCAG
CAGTTCGTGATGGGGCAGCTGAAGGGTTTCTCTGCCCACTGGTGGAACTTCCGCCACTTC
CAGCACCACGCCAAGCCCAACATCTTCCACAAGGACCCAGACGTGACCGTGGCACCTGTC
TTCCTCCTGGGGGAGTCATCCATCGAGTACGGCCAGAAGAAGCGGAGATACTTACCCTAC
AACCACCAGCACCTCTACTTCTTCCTGATCGGCCCGCCTCTGCTCACGCTGGTGAACTTC
GAAGTGGAAAATCTGGCATACATGCTGGTGTGCCTGCAGTGGACGGACTTGCTCTGGGCT
GCCAGCTTCTACATCCGCTTCTTCTTATCCTACATCCCCCTGTACGGCGTTCCTGGGGCG
CTGCTCCTCTTCGTGGCTGTCAGGGTCCTGGAGAGCCACTGGTTCGTGTGGATCACACAG
ATGAACCACATCCCCAAGGAGATCGGCCACGAAAAGCACCGGGACTGGGCCAGTTCCCAG
TTGGCAGCCACCTGCAACGTGGAGCCCTCCCTCTTCATCGACTGGTTCAGCGGACACCTC
AACTTCCAGATCGAGCACCACCTCTTCCCCACGATGCCAAGGCACAACTACCGCAGGGTG
GCCCCGCTGGTCAAGGCGTTGTGTGCCAAGCACGGCCTCAGCTACGAGGTGAAGCCCTTC
CTCACCGCCCTGGTGGACATCATTAGGTCCCTGAAGAAGTCTGGCAACGTGTGGCTGGAA
GCCTACCTCCACCAGTGAAGGCAGCACCCAGGACCCTGGCAGCCACCAAGCCGCCCGGAT
GCTCCCCAGCTGCACCCCCCCACACACACCCCGGCACGCCCTCCCCTGTCTGCTCCACAG
CCCTAAGGCCAGCGCCCTCAACCCAAGAGGCCCAGAGCTAGGGGGGTGGTGTATACAGCC
ACGTGGTGAGCATGGCATGTTTTCCTAGAGCAAAAAAAATAGGGGAAGATGTTATTTTTA
TATAAAAACAAACCCAGATATGTTATGGAGTATTGAATTGGCAAGAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13436176|gb|AAH04901.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13436176|gb|AAH04901.1|

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               117-605, gnl|bosTau2|chr14 (20548223-20547747)
               

               
               117-605, gnl|Hg17|chr11 (61352430-61364542)
               

               
               117-605, gnl|Mm7|chr19 (9781616-9769070)
               


               
               633-1297, gnl|bosTau2|chr14 (20547740-20547090)
               

               
               633-1297, gnl|Hg17|chr11 (61364549-61387834)
               


               
               1405-1712, gnl|bosTau2|chr29 (31613031-31613363)
               

               
               1405-1712, gnl|Hg17|chr11 (61397915-61397564)
               

               
               1405-1712, gnl|Mm7|chr19 (9738008-9738372)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-605, gnl|bosTau2|chr14 (20548223-20547747)
               

               
               117-605, gnl|Hg17|chr11 (61352430-61364542)
               

               
               117-605, gnl|Mm7|chr19 (9781616-9769070)
               


               
               633-1297, gnl|bosTau2|chr14 (20547740-20547090)
               

               
               633-1297, gnl|Hg17|chr11 (61364549-61387834)
               


               
               1405-1712, gnl|bosTau2|chr29 (31613031-31613363)
               

               
               1405-1712, gnl|Hg17|chr11 (61397915-61397564)
               

               
               1405-1712, gnl|Mm7|chr19 (9738008-9738372)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               med (0.58126)
               

               
               fty (0.527519)
               

               
               eru (0.360144)
               

               
               lnt (0.284616)
               

               
               ecc (0.23007)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.58126)
               

               
               fty (0.527519)
               

               
               eru (0.360144)
               

               
               lnt (0.284616)
               

               
               ecc (0.23007)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	117-605, gnl\|bosTau2\|chr14 (20548223-20547747)
	117-605, gnl\|Hg17\|chr11 (61352430-61364542)
	117-605, gnl\|Mm7\|chr19 (9781616-9769070)

	633-1297, gnl\|bosTau2\|chr14 (20547740-20547090)
	633-1297, gnl\|Hg17\|chr11 (61364549-61387834)

	1405-1712, gnl\|bosTau2\|chr29 (31613031-31613363)
	1405-1712, gnl\|Hg17\|chr11 (61397915-61397564)
	1405-1712, gnl\|Mm7\|chr19 (9738008-9738372)

	med (0.58126)
	fty (0.527519)
	eru (0.360144)
	lnt (0.284616)
	ecc (0.23007)
	fbs (0.175346)
	csp (0.161186)
	cag (0.151194)
	hyp (0.142837)
	pty (0.142714)
	hlv (0.139256)
	nca (0.136874)
	ute (0.132784)
	thg (0.126791)
	eep (0.122564)
	jca (0.11396)