Ss1.1-recc2803c_m16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACCTCGTTCACAGCCTGGATGAGTCAAATGTCCAGGCTTTGTATTCACGAGGTTTAACA CAGACCCATCAGCCCAAGTCCGCAGGGCAGTCGGGCAGCAGGCGGTGAAAAGGACGAGCT GGAGCTCTCCTAGGTGCAGTGTGGGTGCAGGCCTCACCCTGCCTGGGCACGTGTGTGATG CGTGCAAGTCCTGCCCAAATAGGTCCCCAGCCACCCTGGCGCGCCTGGGGACGCATCCTG TGGGGCCCGGGCCTTGTGAGGAATGCGGCCAAGTCCAAAGCAAGAGGGAGCTTGTGTGCT AGACACTGGCCAGGGCCACCCCTCCTTCCCCTGCTGTGACTTCTAGAGCCCAGGCTCTGT CTCCTCAGCGGGCTGGAGTGGGGTCCCTCTCCTGAAGGGTTCATCCCCTTGATTGCTAGA AGCAGTGGGTGGTCACCAGAGCTGGGCCGGGCAGGTCAGCAGGCAGTGGCTTGGGGCGCT CAGCCCAGACCGCCCCTGGGGTTGGCAAAGCCACCTGTCCAGGCCTCCAGGCCGGGGCTC TTGGGACAGGAGTTGCTTGGGCCTCCTCGGTGTTCCTGGATTTCTTCTGACAGCCACCAC CCTGGACTTGCTTCCCCAGGCCTCCCGCCTGTAAATAGAAGCCCACAAACTGTGTACAGA TTTACAGAGACGCCGAGGCCGGGCCCCAGAGTCTCCATCTAAGGGCTGATGGCCCCAGCA TCCCCCCGGGCGCCCACCAGGCAGCTCAGCGCACCGGCCGCAGCGTGGCGAATGCATGTA AATATTTTCTGTAGGCAGCGCGGCTCCAGGGAGCCCCCTGAAGACAGTGCCCCTCCCGTG CGTCCTTTTTCCTGTACAGAACCCTGCCTGGGATTGGGGGGCGCGTGCCCTTCCCTCCCC GAGGCTTCCTTGCCCCATCCCTCCCCCATAACCTGTTTATTAACCATACCTGTCCTAAGT TCATGGCCAAAACTTTAAGAAAAAGCGGTGGAAAAAGAAACCAAGGCACCTGCCCCGTGG CGGGCGCTTACTGTCCCAGCCTTGCGAAGGAACTGTTTGGGGTTTTGTTTTTTGTTTTTT TTTTTTGGTTAATTGATTTTTTGTTTTTTAACACTTCCCGTGCTGTGCCCCATTTATAAG AGGAAATAAAATTAAGCTGAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACCTCGTTCACAGCCTGGATGAGTCAAATGTCCAGGCTTTGTATTCACGAGGTTTAACA CAGACCCATCAGCCCAAGTCCGCAGGGCAGTCGGGCAGCAGGCGGTGAAAAGGACGAGCT GGAGCTCTCCTAGGTGCAGTGTGGGTGCAGGCCTCACCCTGCCTGGGCACGTGTGTGATG CGTGCAAGTCCTGCCCAAATAGGTCCCCAGCCACCCTGGCGCGCCTGGGGACGCATCCTG TGGGGCCCGGGCCTTGTGAGGAATGCGGCCAAGTCCAAAGCAAGAGGGAGCTTGTGTGCT AGACACTGGCCAGGGCCACCCCTCCTTCCCCTGCTGTGACTTCTAGAGCCCAGGCTCTGT CTCCTCAGCGGGCTGGAGTGGGGTCCCTCTCCTGAAGGGTTCATCCCCTTGATTGCTAGA AGCAGTGGGTGGTCACCAGAGCTGGGCCGGGCAGGTCAGCAGGCAGTGGCTTGGGGCGCT CAGCCCAGACCGCCCCTGGGGTTGGCAAAGCCACCTGTCCAGGCCTCCAGGCCGGGGCTC TTGGGACAGGAGTTGCTTGGGCCTCCTCGGTGTTCCTGGATTTCTTCTGACAGCCACCAC CCTGGACTTGCTTCCCCAGGCCTCCCGCCTGTAAATAGAAGCCCACAAACTGTGTACAGA TTTACAGAGACGCCGAGGCCGGGCCCCAGAGTCTCCATCTAAGGGCTGATGGCCCCAGCA TCCCCCCGGGCGCCCACCAGGCAGCTCAGCGCACCGGCCGCAGCGTGGCGAATGCATGTA AATATTTTCTGTAGGCAGCGCGGCTCCAGGGAGCCCCCTGAAGACAGTGCCCCTCCCGTG CGTCCTTTTTCCTGTACAGAACCCTGCCTGGGATTGGGGGGCGCGTGCCCTTCCCTCCCC GAGGCTTCCTTGCCCCATCCCTCCCCCATAACCTGTTTATTAACCATACCTGTCCTAAGT TCATGGCCAAAACTTTAAGAAAAAGCGGTGGAAAAAGAAACCAAGGCACCTGCCCCGTGG CGGGCGCTTACTGTCCCAGCCTTGCGAAGGAACTGTTTGGGGTTTTGTTTTTTGTTTTTT TTTTTTGGTTAATTGATTTTTTGTTTTTTAACACTTCCCGTGCTGTGCCCCATTTATAAG AGGAAATAAAATTAAGCTGAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 308-550, + strand, RNAz p=0.839936 | |
| 357-452, - strand, RNAz p=0.911891 | |
| 640-757, - strand, RNAz p=0.916482 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 308-550, + strand, RNAz p=0.839936 | |
| 357-452, - strand, RNAz p=0.911891 | |
| 640-757, - strand, RNAz p=0.916482 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 666-751, - strand, RNAmicro p=0.960379 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AB007937, - |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 22-305, gnl|bosTau2|chr2 (75099542-75099281) | |
| 22-305, gnl|canFam2|chr2 (72982966-72982642) | |
| 22-305, gnl|dasNov1|scaffold_126035 (8085-8423) | |
| 22-305, gnl|hg17|chr1 (31012273-31012558) | |
| 22-305, gnl|Hg17|chr1 (31012558-31012306) | |
| 22-305, gnl|mm7|chr4 (130039873-130039529) | |
| 22-305, gnl|Mm7|chr4 (130039527-130039836) | |
| 22-305, gnl|monDom2|scaffold_43 (1787146-1787436) | |
| 22-305, gnl|oryCun1|scaffold_192282 (4175-4519) | |
| 22-305, gnl|panTro1|chr1 (31685452-31685737) | |
| 22-305, gnl|rheMac2|chr1 (33635002-33635288) | |
| 22-305, gnl|rn3|chr5 (149496935-149497279) | |
| 308-550, gnl|bosTau2|chr2 (75099242-75099005) | |
| 308-550, gnl|canFam2|chr2 (72983345-72983033) | |
| 308-550, gnl|dasNov1|scaffold_126035 (7684-8024) | |
| 308-550, gnl|echTel1|scaffold_320410 (2737-2480) | |
| 308-550, gnl|hg17|chr1 (31011949-31012237) | |
| 308-550, gnl|Hg17|chr1 (31012271-31012067) | |
| 308-550, gnl|loxAfr1|scaffold_62697 (7430-7125) | |
| 308-550, gnl|mm7|chr4 (130040195-130039913) | |
| 308-550, gnl|Mm7|chr4 (130039873-130040093) | |
| 308-550, gnl|monDom2|scaffold_43 (1786803-1787118) | |
| 308-550, gnl|oryCun1|scaffold_192282 (3865-4135) | |
| 308-550, gnl|panTro1|chr1 (31685136-31685420) | |
| 308-550, gnl|rheMac2|chr1 (33634687-33634970) | |
| 308-550, gnl|rn3|chr5 (149496626-149496895) | |
| 564-1073, gnl|bosTau2|chr2 (75098960-75098415) | |
| 564-1073, gnl|Hg17|chr1 (31012025-31011463) | |
| 564-1073, gnl|Mm7|chr4 (130040131-130040678) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-305, gnl|bosTau2|chr2 (75099542-75099281) | |
| 22-305, gnl|canFam2|chr2 (72982966-72982642) | |
| 22-305, gnl|dasNov1|scaffold_126035 (8085-8423) | |
| 22-305, gnl|hg17|chr1 (31012273-31012558) | |
| 22-305, gnl|Hg17|chr1 (31012558-31012306) | |
| 22-305, gnl|mm7|chr4 (130039873-130039529) | |
| 22-305, gnl|Mm7|chr4 (130039527-130039836) | |
| 22-305, gnl|monDom2|scaffold_43 (1787146-1787436) | |
| 22-305, gnl|oryCun1|scaffold_192282 (4175-4519) | |
| 22-305, gnl|panTro1|chr1 (31685452-31685737) | |
| 22-305, gnl|rheMac2|chr1 (33635002-33635288) | |
| 22-305, gnl|rn3|chr5 (149496935-149497279) | |
| 308-550, gnl|bosTau2|chr2 (75099242-75099005) | |
| 308-550, gnl|canFam2|chr2 (72983345-72983033) | |
| 308-550, gnl|dasNov1|scaffold_126035 (7684-8024) | |
| 308-550, gnl|echTel1|scaffold_320410 (2737-2480) | |
| 308-550, gnl|hg17|chr1 (31011949-31012237) | |
| 308-550, gnl|Hg17|chr1 (31012271-31012067) | |
| 308-550, gnl|loxAfr1|scaffold_62697 (7430-7125) | |
| 308-550, gnl|mm7|chr4 (130040195-130039913) | |
| 308-550, gnl|Mm7|chr4 (130039873-130040093) | |
| 308-550, gnl|monDom2|scaffold_43 (1786803-1787118) | |
| 308-550, gnl|oryCun1|scaffold_192282 (3865-4135) | |
| 308-550, gnl|panTro1|chr1 (31685136-31685420) | |
| 308-550, gnl|rheMac2|chr1 (33634687-33634970) | |
| 308-550, gnl|rn3|chr5 (149496626-149496895) | |
| 564-1073, gnl|bosTau2|chr2 (75098960-75098415) | |
| 564-1073, gnl|Hg17|chr1 (31012025-31011463) | |
| 564-1073, gnl|Mm7|chr4 (130040131-130040678) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| amn (0.835422) | |
| ebs (0.591506) | |
| ece (0.45861) | |
| hyp (0.42851) | |
| ecc (0.345105) | |
| cli (0.305623) | |
| fce (0.271592) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cov (0.132153) | |
| eru (0.120048) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.835422) | |
| ebs (0.591506) | |
| ece (0.45861) | |
| hyp (0.42851) | |
| ecc (0.345105) | |
| cli (0.305623) | |
| fce (0.271592) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cov (0.132153) | |
| eru (0.120048) | |
| cty (0.10408) | |
| eje (0.0988338) |