Non-Coding RNA Search

Ss1.1-recc2803c_m21.5

Sequence:


               
               CCCAGGAGCGCGAGTGTCTCTCTGCCGCCTCGTGGGGCCCTATGTGCCCCTGTGGCTCGG
CCAGGAGGCTGGCCTCTGCCTGGACCCTGGGCCGCCCAGTCACGCCTTTGCGCCCTGCGG
CCACGTCTGCTCCGAGAAGACTGCCCGCTACTGGGCTCAGACGCCGCTGCCCCATGGCAC
CCACGCCTTCCATGCCGCCTGCCCCTTTTGCGGGGCCTGGCTCACTGGCGAGCATGGCTG
TGTCCGCCTCATTTTCCAGGGGCCGCTGGACTAGGCTCCCTGGGGCCTCCTGCTGCTGCG
CCCGCCTGCCCACCCAGGTCCCCCACCTCCTGCAGCCCAGAGGGAGCTCTGCATGTGGGA
CTCTACCTGCTGGCACATAGCCAGCCGGATGGACGCGTTGGATGGGCTGTGCCCTTCCTC
TCTTAACTCTGACTCCGAAGGGGGTCCCCGCGACTCCTATCCCCAGTCAGAATAATGGGG
CCATCGGCACCAGCTCTCACTCGGCCGATGGAGGGGAGCCCACCCCTGTGCCCCAGCCCG
TCCTGGGGCATCCCACATCATGCCGCCTACACTGTGCCCCTGGGGGAGTGAAGGGGCCGG
GAGCCCCTGACCCCCAGCTTAGGCTGGCTGTGCCCTGAGCCTGCCAACCCAGCTCCAGAT
CATCGCCCTGCTGCTGCTCTGGGTTCCTCTATAAACCTTGCCGCTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGGAGCGCGAGTGTCTCTCTGCCGCCTCGTGGGGCCCTATGTGCCCCTGTGGCTCGG
CCAGGAGGCTGGCCTCTGCCTGGACCCTGGGCCGCCCAGTCACGCCTTTGCGCCCTGCGG
CCACGTCTGCTCCGAGAAGACTGCCCGCTACTGGGCTCAGACGCCGCTGCCCCATGGCAC
CCACGCCTTCCATGCCGCCTGCCCCTTTTGCGGGGCCTGGCTCACTGGCGAGCATGGCTG
TGTCCGCCTCATTTTCCAGGGGCCGCTGGACTAGGCTCCCTGGGGCCTCCTGCTGCTGCG
CCCGCCTGCCCACCCAGGTCCCCCACCTCCTGCAGCCCAGAGGGAGCTCTGCATGTGGGA
CTCTACCTGCTGGCACATAGCCAGCCGGATGGACGCGTTGGATGGGCTGTGCCCTTCCTC
TCTTAACTCTGACTCCGAAGGGGGTCCCCGCGACTCCTATCCCCAGTCAGAATAATGGGG
CCATCGGCACCAGCTCTCACTCGGCCGATGGAGGGGAGCCCACCCCTGTGCCCCAGCCCG
TCCTGGGGCATCCCACATCATGCCGCCTACACTGTGCCCCTGGGGGAGTGAAGGGGCCGG
GAGCCCCTGACCCCCAGCTTAGGCTGGCTGTGCCCTGAGCCTGCCAACCCAGCTCCAGAT
CATCGCCCTGCTGCTGCTCTGGGTTCCTCTATAAACCTTGCCGCTCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q659D8_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q659D8_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               119-278, - strand, RNAz p=0.994667
               

               
               359-555, - strand, RNAz p=0.998691

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-278, - strand, RNAz p=0.994667
               

               
               359-555, - strand, RNAz p=0.998691

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-708, gnl|bosTau2|chr29 (37054683-37053982)
               

               
               1-708, gnl|Hg17|chr11 (65999940-66000658)
               

               
               1-708, gnl|Mm7|chr19 (4827378-4826673)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr29 (37054683-37053982)
               

               
               1-708, gnl|Hg17|chr11 (65999940-66000658)
               

               
               1-708, gnl|Mm7|chr19 (4827378-4826673)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fty (0.17584)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	119-278, - strand, RNAz p=0.994667
	359-555, - strand, RNAz p=0.998691

	1-708, gnl\|bosTau2\|chr29 (37054683-37053982)
	1-708, gnl\|Hg17\|chr11 (65999940-66000658)
	1-708, gnl\|Mm7\|chr19 (4827378-4826673)