Non-Coding RNA Search

Ss1.1-recc2804c_e15.5

Sequence:


               
               CTGGGGGCCGCCAAGCACTGGAAACCACGTGGCGTCCCTTCTAATGAGACAATCAAGTCC
AGAGCTGGGGCACTTTCAGGGACTTAACTGATCTCAGGCGCTCCATTTGGACTCTAGGAC
TCGGGCTCCAGGCCAGTGCCCTCGTGTTTACTCTGATCTTGATCTAGCCCTCTCTGGGTG
TTGGGCTCTGCCTGGAGGATCTCCCCCCCCCACTTCCTCCCTACTTTGGTCAGGCAAGTT
GGGGCAGGAGCACTTGGCTTCTCATTCCTTCTGGAGAACATACTGACATTGGCCTGGATG
CCTTTCTGGCCTTTTCTGGACCAGGCCCTACTCCTTCCCTGAGTCTGAATGCTTGCCCAT
ATTTCTAGACTCCTGTGCCCTGCGGGAAATCCCTCTGCTGAGGACAAGTGTCTCTCTCCC
CCCGCACCCTTCCCCCCCTACCACAAGCCCTGTCTGCTAGATGCATCGCATCATGAAACC
ACTGGGTTCTAGGTCCCGGCTGTCGGATCTAGAACCTTGCCGCTGTGCTGCCTCCTGATC
CCTGCCCCCTGGTCTAGAACTCGACCCACTGGATTCTAGATCCTCCATATTTACCTCGAG
GCTCTTCCATCCCAAGCTGTGCCTGACCCCCAGCTTTGGTGAGAGGAAGGGGCCCCTCAC
GTGTGCTGTGCTGTTTCTGCTGCACTTGGTTTGCAGTTGGGGGGGGGAGGGCGGAAGGGT
TGCGATTGAAGTGTGTCCAGAGATGAAAAAAATACATCTATATTTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGGGCCGCCAAGCACTGGAAACCACGTGGCGTCCCTTCTAATGAGACAATCAAGTCC
AGAGCTGGGGCACTTTCAGGGACTTAACTGATCTCAGGCGCTCCATTTGGACTCTAGGAC
TCGGGCTCCAGGCCAGTGCCCTCGTGTTTACTCTGATCTTGATCTAGCCCTCTCTGGGTG
TTGGGCTCTGCCTGGAGGATCTCCCCCCCCCACTTCCTCCCTACTTTGGTCAGGCAAGTT
GGGGCAGGAGCACTTGGCTTCTCATTCCTTCTGGAGAACATACTGACATTGGCCTGGATG
CCTTTCTGGCCTTTTCTGGACCAGGCCCTACTCCTTCCCTGAGTCTGAATGCTTGCCCAT
ATTTCTAGACTCCTGTGCCCTGCGGGAAATCCCTCTGCTGAGGACAAGTGTCTCTCTCCC
CCCGCACCCTTCCCCCCCTACCACAAGCCCTGTCTGCTAGATGCATCGCATCATGAAACC
ACTGGGTTCTAGGTCCCGGCTGTCGGATCTAGAACCTTGCCGCTGTGCTGCCTCCTGATC
CCTGCCCCCTGGTCTAGAACTCGACCCACTGGATTCTAGATCCTCCATATTTACCTCGAG
GCTCTTCCATCCCAAGCTGTGCCTGACCCCCAGCTTTGGTGAGAGGAAGGGGCCCCTCAC
GTGTGCTGTGCTGTTTCTGCTGCACTTGGTTTGCAGTTGGGGGGGGGAGGGCGGAAGGGT
TGCGATTGAAGTGTGTCCAGAGATGAAAAAAATACATCTATATTTAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               472-589, - strand, RNAz p=0.893452

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               472-589, - strand, RNAz p=0.893452

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               578-680, + strand, RNAmicro p=0.963728

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               578-680, + strand, RNAmicro p=0.963728

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-768, gnl|bosTau2|chr18 (48136690-48135934)
               

               
               7-768, gnl|Hg17|chr19 (54163942-54163201)
               

               
               7-768, gnl|Mm7|chr7 (41631495-41632339)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-768, gnl|bosTau2|chr18 (48136690-48135934)
               

               
               7-768, gnl|Hg17|chr19 (54163942-54163201)
               

               
               7-768, gnl|Mm7|chr7 (41631495-41632339)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               elu (0.385356)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

	7-768, gnl\|bosTau2\|chr18 (48136690-48135934)
	7-768, gnl\|Hg17\|chr19 (54163942-54163201)
	7-768, gnl\|Mm7\|chr7 (41631495-41632339)

	elu (0.385356)
	cbl (0.229595)
	nms (0.213858)
	mas (0.210305)
	nlu (0.191681)
	cki (0.165235)
	lnt (0.142308)
	nca (0.136874)
	ese (0.126502)
	ecc (0.115035)