Non-Coding RNA Search

Ss1.1-recc2804c_g13.5

Sequence:


               
               GTGGGAGGGTTAAGACTAACGAAGGGCTAGAGAGCTATTGCCTACAGGCTTCGAGGTCAC
CCACGCCACTTATTATCCCGTACACCCTTTCACCATCTCAGTGTCTACTCTGATGCCCCC
AAGATTCAACCGAGCAGCTAGCTGGCCCCATAATTCTGGGCCTTTGTTATTTGTTTTACT
ATTAGGGCCTCCCAGGAAGCTTTCTGATGATCCTCTGCCATGGGCCCCTCCTGGGATTGA
GCCCCTCCCAGGCCCCGTCCCCAGCCCCTCCTGCCCCAGCCCACCCGCTTGCCTTGGTGC
TCAGCCCCCCATTGGGAGCAGGTTGGGGCGAGCTGGAGGCCCGGGCTGGAGGGGCAGTGT
TGCTGTTCATAGCTTTTGTTCCATTGGCGTTGCTCTGTTGGATTTAATTTCAGTCTTCCT
GATTCTTCCCTTCTGTAAAGTGTACATTACCAAGTTCCTTGTTTTTTTATATATATATAT
AAATATATATATATACAAACTGTACTCTTTTTGCCTTTGTACATTCAGGCAAGAAGAGAA
AATAAATCTTTTTAAGAGACAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGGAGGGTTAAGACTAACGAAGGGCTAGAGAGCTATTGCCTACAGGCTTCGAGGTCAC
CCACGCCACTTATTATCCCGTACACCCTTTCACCATCTCAGTGTCTACTCTGATGCCCCC
AAGATTCAACCGAGCAGCTAGCTGGCCCCATAATTCTGGGCCTTTGTTATTTGTTTTACT
ATTAGGGCCTCCCAGGAAGCTTTCTGATGATCCTCTGCCATGGGCCCCTCCTGGGATTGA
GCCCCTCCCAGGCCCCGTCCCCAGCCCCTCCTGCCCCAGCCCACCCGCTTGCCTTGGTGC
TCAGCCCCCCATTGGGAGCAGGTTGGGGCGAGCTGGAGGCCCGGGCTGGAGGGGCAGTGT
TGCTGTTCATAGCTTTTGTTCCATTGGCGTTGCTCTGTTGGATTTAATTTCAGTCTTCCT
GATTCTTCCCTTCTGTAAAGTGTACATTACCAAGTTCCTTGTTTTTTTATATATATATAT
AAATATATATATATACAAACTGTACTCTTTTTGCCTTTGTACATTCAGGCAAGAAGAGAA
AATAAATCTTTTTAAGAGACAATC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               128-363, - strand, RNAz p=0.997762
               

               
               404-521, - strand, RNAz p=0.962035

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-363, - strand, RNAz p=0.997762
               

               
               404-521, - strand, RNAz p=0.962035

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               452-536, - strand, RNAmicro p=0.995267
               

               
               280-394, - strand, RNAmicro p=0.967312
               

               
               283-375, + strand, RNAmicro p=0.956173

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               452-536, - strand, RNAmicro p=0.995267
               

               
               280-394, - strand, RNAmicro p=0.967312
               

               
               283-375, + strand, RNAmicro p=0.956173

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               404-467, UMC-bcl_0A01-036-h02 Corpus Luteum (CL) bcl Bos taurus cDNA 3', 
(gb|DN818298.1|), blast E-value=9e-27, identity=100% 
               

               
               404-467, nae05b12.y1 Dog eye eye minus lens and cornea. Unnormalized (nae) 
(gb|DN876270.1|), blast E-value=9e-27, identity=100% 
               

               
               404-467, JHU143A04L695 Canine cardiovascular system biased cDNA Canis 
(gb|DR107595.1|), blast E-value=9e-27, identity=100% 
               

               
               404-467, RVL14633 Wackym-Soares normalized rat vestibular cDNA library 
(gb|DV722951.1|), blast E-value=9e-27, identity=100% 
               

               
               404-467, 001202BFMA005910HT BFMA Bos taurus cDNA, mRNA sequence 
(gb|DY171549.1|), blast E-value=9e-27, identity=100% 
               

               
               404-467, 191499 Pigtailed macaque testis library Macaca nemestrina cDNA 3', 
(gb|DY743943.1|), blast E-value=9e-27, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               404-467, UMC-bcl_0A01-036-h02 Corpus Luteum (CL) bcl Bos taurus cDNA 3', 
(gb|DN818298.1|), blast E-value=9e-27, identity=100% 
               

               
               404-467, nae05b12.y1 Dog eye eye minus lens and cornea. Unnormalized (nae) 
(gb|DN876270.1|), blast E-value=9e-27, identity=100% 
               

               
               404-467, JHU143A04L695 Canine cardiovascular system biased cDNA Canis 
(gb|DR107595.1|), blast E-value=9e-27, identity=100% 
               

               
               404-467, RVL14633 Wackym-Soares normalized rat vestibular cDNA library 
(gb|DV722951.1|), blast E-value=9e-27, identity=100% 
               

               
               404-467, 001202BFMA005910HT BFMA Bos taurus cDNA, mRNA sequence 
(gb|DY171549.1|), blast E-value=9e-27, identity=100% 
               

               
               404-467, 191499 Pigtailed macaque testis library Macaca nemestrina cDNA 3', 
(gb|DY743943.1|), blast E-value=9e-27, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               65-564, gnl|bosTau2|chr10 (30591463-30591962)
               

               
               65-564, gnl|Hg17|chr15 (62763997-62764514)
               

               
               65-564, gnl|Mm7|chr9 (65722514-65722037)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-564, gnl|bosTau2|chr10 (30591463-30591962)
               

               
               65-564, gnl|Hg17|chr15 (62763997-62764514)
               

               
               65-564, gnl|Mm7|chr9 (65722514-65722037)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fce (0.271592)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	128-363, - strand, RNAz p=0.997762
	404-521, - strand, RNAz p=0.962035

	452-536, - strand, RNAmicro p=0.995267
	280-394, - strand, RNAmicro p=0.967312
	283-375, + strand, RNAmicro p=0.956173

	404-467, UMC-bcl_0A01-036-h02 Corpus Luteum (CL) bcl Bos taurus cDNA 3', (gb\|DN818298.1\|), blast E-value=9e-27, identity=100%
	404-467, nae05b12.y1 Dog eye eye minus lens and cornea. Unnormalized (nae) (gb\|DN876270.1\|), blast E-value=9e-27, identity=100%
	404-467, JHU143A04L695 Canine cardiovascular system biased cDNA Canis (gb\|DR107595.1\|), blast E-value=9e-27, identity=100%
	404-467, RVL14633 Wackym-Soares normalized rat vestibular cDNA library (gb\|DV722951.1\|), blast E-value=9e-27, identity=100%
	404-467, 001202BFMA005910HT BFMA Bos taurus cDNA, mRNA sequence (gb\|DY171549.1\|), blast E-value=9e-27, identity=100%
	404-467, 191499 Pigtailed macaque testis library Macaca nemestrina cDNA 3', (gb\|DY743943.1\|), blast E-value=9e-27, identity=100%

	65-564, gnl\|bosTau2\|chr10 (30591463-30591962)
	65-564, gnl\|Hg17\|chr15 (62763997-62764514)
	65-564, gnl\|Mm7\|chr9 (65722514-65722037)

	fce (0.271592)
	mas (0.210305)
	nlu (0.191681)
	cag (0.151194)
	lnt (0.142308)
	pla (0.133672)
	nmm (0.132802)
	eru (0.120048)
	ecc (0.115035)
	cty (0.10408)