Non-Coding RNA Search

Ss1.1-recc2804c_l1.5

Sequence:


               
               TAACAGATGTGGAGTGGGCAGGACCTCTGGGCCATGTTGCAAGGCACACCTGGCAGAGAG
ACTAGGATGGGACTCTGGGCCTGCGGCCCGGCACAAGGACACATCCCCTAAGAAGACCTA
CCTCGGGAGGTGACAGCAGAGGGACCGAAGGAGCCTGGAATTGGAGGAAGGTTCTGTGCC
CTAGTGGAAAACCTCCCTGAACCTGCTGGGAGTCACAGCCAGAGAAGAGCTGGTCCCAGC
TGCCTGGACACCAAGCTCCACTCTTCAGGGGCAGCAGGGACAGGTCTTGTGTGGGGAGCC
CGCTTCTCTGCACCTGCCTGGCACACCAGAGACAGCAAGTGACTGGCCTAAGGGAACACA
GCACATTGATCAGGCTCCAGAGGCAAAACCTTCCTCCAGGGAGGAATGTACCTGCAGGCT
TCACTCTGCTTTCAGGGCAACAGTTAACATTTTGAGGTCATGAAGCCCTTTGAAAGGATG
TCGGAGGTTATGAACCTTCCTCCCAGGAAAACACATACTCGTGTAGGGAAGAATCTACAA
GCAGTCCCAGGAGCGCTTGGACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACAGATGTGGAGTGGGCAGGACCTCTGGGCCATGTTGCAAGGCACACCTGGCAGAGAG
ACTAGGATGGGACTCTGGGCCTGCGGCCCGGCACAAGGACACATCCCCTAAGAAGACCTA
CCTCGGGAGGTGACAGCAGAGGGACCGAAGGAGCCTGGAATTGGAGGAAGGTTCTGTGCC
CTAGTGGAAAACCTCCCTGAACCTGCTGGGAGTCACAGCCAGAGAAGAGCTGGTCCCAGC
TGCCTGGACACCAAGCTCCACTCTTCAGGGGCAGCAGGGACAGGTCTTGTGTGGGGAGCC
CGCTTCTCTGCACCTGCCTGGCACACCAGAGACAGCAAGTGACTGGCCTAAGGGAACACA
GCACATTGATCAGGCTCCAGAGGCAAAACCTTCCTCCAGGGAGGAATGTACCTGCAGGCT
TCACTCTGCTTTCAGGGCAACAGTTAACATTTTGAGGTCATGAAGCCCTTTGAAAGGATG
TCGGAGGTTATGAACCTTCCTCCCAGGAAAACACATACTCGTGTAGGGAAGAATCTACAA
GCAGTCCCAGGAGCGCTTGGACTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               83-214, - strand, RNAz p=0.853719
               

               
               134-248, - strand, RNAz p=0.544283

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-214, - strand, RNAz p=0.853719
               

               
               134-248, - strand, RNAz p=0.544283

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               3-564, gnl|bosTau2|chr4 (65160219-65160784)
               

               
               3-564, gnl|canFam2|chr16 (17672307-17673013)
               

               
               3-564, gnl|dasNov1|scaffold_49248 (6202-6907)
               

               
               3-564, gnl|hg17|chr7 (149544608-149545332)
               

               
               3-564, gnl|Hg17|chr7 (149544892-149545539)
               

               
               3-564, gnl|loxAfr1|scaffold_74358 (4454-4062)
               

               
               3-564, gnl|mm7|chr6 (48591305-48591990)
               

               
               3-564, gnl|Mm7|chr6 (48591586-48592163)
               

               
               3-564, gnl|oryCun1|scaffold_196215 (178-853)
               

               
               3-564, gnl|panTro1|chr6_random (17385967-17385243)
               

               
               3-564, gnl|rheMac2|chr3 (187292270-187292994)
               

               
               3-564, gnl|rn3|chr4 (76997732-76998422)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-564, gnl|bosTau2|chr4 (65160219-65160784)
               

               
               3-564, gnl|canFam2|chr16 (17672307-17673013)
               

               
               3-564, gnl|dasNov1|scaffold_49248 (6202-6907)
               

               
               3-564, gnl|hg17|chr7 (149544608-149545332)
               

               
               3-564, gnl|Hg17|chr7 (149544892-149545539)
               

               
               3-564, gnl|loxAfr1|scaffold_74358 (4454-4062)
               

               
               3-564, gnl|mm7|chr6 (48591305-48591990)
               

               
               3-564, gnl|Mm7|chr6 (48591586-48592163)
               

               
               3-564, gnl|oryCun1|scaffold_196215 (178-853)
               

               
               3-564, gnl|panTro1|chr6_random (17385967-17385243)
               

               
               3-564, gnl|rheMac2|chr3 (187292270-187292994)
               

               
               3-564, gnl|rn3|chr4 (76997732-76998422)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               ecc (0.115035)

	83-214, - strand, RNAz p=0.853719
	134-248, - strand, RNAz p=0.544283

	3-564, gnl\|bosTau2\|chr4 (65160219-65160784)
	3-564, gnl\|canFam2\|chr16 (17672307-17673013)
	3-564, gnl\|dasNov1\|scaffold_49248 (6202-6907)
	3-564, gnl\|hg17\|chr7 (149544608-149545332)
	3-564, gnl\|Hg17\|chr7 (149544892-149545539)
	3-564, gnl\|loxAfr1\|scaffold_74358 (4454-4062)
	3-564, gnl\|mm7\|chr6 (48591305-48591990)
	3-564, gnl\|Mm7\|chr6 (48591586-48592163)
	3-564, gnl\|oryCun1\|scaffold_196215 (178-853)
	3-564, gnl\|panTro1\|chr6_random (17385967-17385243)
	3-564, gnl\|rheMac2\|chr3 (187292270-187292994)
	3-564, gnl\|rn3\|chr4 (76997732-76998422)