Non-Coding RNA Search

Ss1.1-recc2804c_m9.5

Sequence:


               
               CTCCAACTTCTACATCAAGAGTCACAGCTACCCTGCTCTAGAGCGGGGCCCACATCGGCG
ACTGCAGTGGACATGGCTGGGCCGGGCTGTGCTGCAGTTTGGGGACCAGACGCTGCAAGT
GACCACCGTGCAGATGTGGCTGCTGCTGCATCTCAACGAGCTGCAGGCCGTCTCCGTGGA
GCGTCTGCTGGCGCTGTCCGGGCTCTCTCCAGATGTGCTGAATTGGGCAATTAGACCTCT
TGCCTCTTCAAGGGGCCCCCTGGAACTTCATGAGCCAAAGGACGCCCCAGGAGGGGTTCT
CAGGATTCGAGATGACAGTGATGAACCCACACCGCGGAAGGGCAACGTGTGGCTCATCCC
AGTTCCGACATACGTGAAAGCTGAGGACGAGGAGGTCCGGAACTTGGAGAAGAGACGGAA
CCTCCTCAACTGCCTCATCGTCCGAATCCTCAAGGCCCACGGGGATGAGGGGCTGCACAT
TGACCAGCTTGTCTGCCTGGTGTTGAAGGCCTGGCACAAGGGCCCATGTCCTCCCAGGGG
CTTGGTCAGCAGCCTTGGCAGCGGGTCCACCTGCAGGAGCACCGATGTTCTCTCCTGCAT
CCTGCACCTCCTGGGCAAGGGCACAGTGAGACGCCAGGACGACCGGCCCCAGATGCTGTC
CTATGCGGTCCCCGTAACTGTGATGGAGCCTCACACTGAGTCCCTGAACCCAGGTGCCTC
GGGCCCCAACCCACCCCTCACCTTCCACACCCTGCAGATCCGCTCCCGGGGCGTGCCCTA
CGCCTCCTGCACCGGCACCCAGAGCTTCTCTACCTTCCGGTAGCCCTGGAGTCAGGCTCA
GGGCTGGGTCCGGCTGGGGGCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCAACTTCTACATCAAGAGTCACAGCTACCCTGCTCTAGAGCGGGGCCCACATCGGCG
ACTGCAGTGGACATGGCTGGGCCGGGCTGTGCTGCAGTTTGGGGACCAGACGCTGCAAGT
GACCACCGTGCAGATGTGGCTGCTGCTGCATCTCAACGAGCTGCAGGCCGTCTCCGTGGA
GCGTCTGCTGGCGCTGTCCGGGCTCTCTCCAGATGTGCTGAATTGGGCAATTAGACCTCT
TGCCTCTTCAAGGGGCCCCCTGGAACTTCATGAGCCAAAGGACGCCCCAGGAGGGGTTCT
CAGGATTCGAGATGACAGTGATGAACCCACACCGCGGAAGGGCAACGTGTGGCTCATCCC
AGTTCCGACATACGTGAAAGCTGAGGACGAGGAGGTCCGGAACTTGGAGAAGAGACGGAA
CCTCCTCAACTGCCTCATCGTCCGAATCCTCAAGGCCCACGGGGATGAGGGGCTGCACAT
TGACCAGCTTGTCTGCCTGGTGTTGAAGGCCTGGCACAAGGGCCCATGTCCTCCCAGGGG
CTTGGTCAGCAGCCTTGGCAGCGGGTCCACCTGCAGGAGCACCGATGTTCTCTCCTGCAT
CCTGCACCTCCTGGGCAAGGGCACAGTGAGACGCCAGGACGACCGGCCCCAGATGCTGTC
CTATGCGGTCCCCGTAACTGTGATGGAGCCTCACACTGAGTCCCTGAACCCAGGTGCCTC
GGGCCCCAACCCACCCCTCACCTTCCACACCCTGCAGATCCGCTCCCGGGGCGTGCCCTA
CGCCTCCTGCACCGGCACCCAGAGCTTCTCTACCTTCCGGTAGCCCTGGAGTCAGGCTCA
GGGCTGGGTCCGGCTGGGGGCTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61827211|ref|XP_610065.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61827211|ref|XP_610065.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               727-864, - strand, RNAz p=0.938719

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               727-864, - strand, RNAz p=0.938719

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-864, gnl|bosTau2|chr23 (16028567-16029427)
               

               
               1-864, gnl|Hg17|chr6 (43115891-43113364)
               

               
               1-864, gnl|Mm7|chr17 (44790936-44793055)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-864, gnl|bosTau2|chr23 (16028567-16029427)
               

               
               1-864, gnl|Hg17|chr6 (43115891-43113364)
               

               
               1-864, gnl|Mm7|chr17 (44790936-44793055)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               ece (0.229305)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ece (0.229305)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	1-864, gnl\|bosTau2\|chr23 (16028567-16029427)
	1-864, gnl\|Hg17\|chr6 (43115891-43113364)
	1-864, gnl\|Mm7\|chr17 (44790936-44793055)