Non-Coding RNA Search

Ss1.1-recc2804c_o18.5

Sequence:


               
               TTTTTAGCGGACAATCTTTATTCACAATTGGGGCGGCAGAGGGGAGAGACCCCCAGGTCA
GTCCAAAAGCAAAGATATTGGGGGTGGGGGATGGAGCAGGGCAGGGACTCATCACTCGTC
CTCGCCCAGCAGGGCGTAGGGGTTTCGGGCAGCCAGGCTGGACCCTGGAGCTGAGGGTGG
GGTGTCCTCATCCCCTTCCCCCTCCTCATCCGCATCCCGGTCCTCCTCTCCCTCCTCCTC
ACAGGAGCTGCTCAGCTCTTCCTCTTCCTCCTCCTCCTCGTCACCTGCTGGCCCCACCCT
GCCCTGCAAAACCACCAGCTCCATGGTCTCTGGATGGGACTCCCAGGTGCCTTTCTGCTC
ACTGTAGCCCGGGGGGTGAAAGCACAGGCTGAGGCGGCCATCTAGCGCCAGCCGCAGGAG
GCTGTTGGCCGCTCTGTACACATCGTTCCGGGCCGCCTTGGCTGTCTTGTAACCACGTTT
CTCTGCCCAGGCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCTGCAGAGGGGTCCTC
AGCCTCTGGGTGGCGCAGGTGGAGCAGGGCCTGCACAGGGATTCGGGAGGCCAGGTAGCC
CACGGCGGTGTAGGGCTCCTGGATTTGGGCAATGGGGTAGATCCCCGCCAGGACCTGCAG
CTGCCTGGGCAGAAGGGAGGGGAATATGAGGCCTGGACAATCACAGAGCTTCACCGAGGG
GGTGAGAAAGTAGGTCTGAAAGTAGCGGGTGTGGCCCGGGGTTCTGGAGACACTCACGAC
CTTCCGCCCCACCAGCCCGTTGATAAGTGACGACTTGCCCACATTGGGGAAACCCACACA
GCCGATGGTCACCACCCCGTCCTTGTAGCGCTCCCGCGTTGGGCCCGTGGGCTCCATCGC
CGAGTCAGTCTGCTGCTCCACCAGGACGGCCGGCCCGTCCTCCTATTCCTCCTCCTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTAGCGGACAATCTTTATTCACAATTGGGGCGGCAGAGGGGAGAGACCCCCAGGTCA
GTCCAAAAGCAAAGATATTGGGGGTGGGGGATGGAGCAGGGCAGGGACTCATCACTCGTC
CTCGCCCAGCAGGGCGTAGGGGTTTCGGGCAGCCAGGCTGGACCCTGGAGCTGAGGGTGG
GGTGTCCTCATCCCCTTCCCCCTCCTCATCCGCATCCCGGTCCTCCTCTCCCTCCTCCTC
ACAGGAGCTGCTCAGCTCTTCCTCTTCCTCCTCCTCCTCGTCACCTGCTGGCCCCACCCT
GCCCTGCAAAACCACCAGCTCCATGGTCTCTGGATGGGACTCCCAGGTGCCTTTCTGCTC
ACTGTAGCCCGGGGGGTGAAAGCACAGGCTGAGGCGGCCATCTAGCGCCAGCCGCAGGAG
GCTGTTGGCCGCTCTGTACACATCGTTCCGGGCCGCCTTGGCTGTCTTGTAACCACGTTT
CTCTGCCCAGGCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCTGCAGAGGGGTCCTC
AGCCTCTGGGTGGCGCAGGTGGAGCAGGGCCTGCACAGGGATTCGGGAGGCCAGGTAGCC
CACGGCGGTGTAGGGCTCCTGGATTTGGGCAATGGGGTAGATCCCCGCCAGGACCTGCAG
CTGCCTGGGCAGAAGGGAGGGGAATATGAGGCCTGGACAATCACAGAGCTTCACCGAGGG
GGTGAGAAAGTAGGTCTGAAAGTAGCGGGTGTGGCCCGGGGTTCTGGAGACACTCACGAC
CTTCCGCCCCACCAGCCCGTTGATAAGTGACGACTTGCCCACATTGGGGAAACCCACACA
GCCGATGGTCACCACCCCGTCCTTGTAGCGCTCCCGCGTTGGGCCCGTGGGCTCCATCGC
CGAGTCAGTCTGCTGCTCCACCAGGACGGCCGGCCCGTCCTCCTATTCCTCCTCCTCCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|423055|pir||B44370

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|423055|pir||B44370

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               653-771, + strand, RNAz p=0.703599

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               653-771, + strand, RNAz p=0.703599

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               653-834, gnl|bosTau2|chr23 (20929257-20929076)
               

               
               653-834, gnl|canFam2|chr12 (3376563-3376775)
               

               
               653-834, gnl|danRer3|chr16 (21806621-21806839)
               

               
               653-834, gnl|echTel1|scaffold_176674 (12753-12955)
               

               
               653-834, gnl|fr1|chrUn (296853649-296853843)
               

               
               653-834, gnl|hg17|chr6 (30623104-30623317)
               

               
               653-834, gnl|Hg17|chr6 (30623106-30623287)
               

               
               653-834, gnl|mm7|chr17 (34091691-34091490)
               

               
               653-834, gnl|Mm7|chr17 (34091687-34091506)
               

               
               653-834, gnl|monDom2|scaffold_42 (18746514-18746272)
               

               
               653-834, gnl|panTro1|chr5 (31075199-31075412)
               

               
               653-834, gnl|rheMac2|chr4 (30127837-30128050)
               

               
               653-834, gnl|rn3|chr20 (2933227-2933438)
               

               
               653-834, gnl|tetNig1|chr8 (9209596-9209383)
               

               
               653-834, gnl|xenTro1|scaffold_547 (680513-680703)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               653-834, gnl|bosTau2|chr23 (20929257-20929076)
               

               
               653-834, gnl|canFam2|chr12 (3376563-3376775)
               

               
               653-834, gnl|danRer3|chr16 (21806621-21806839)
               

               
               653-834, gnl|echTel1|scaffold_176674 (12753-12955)
               

               
               653-834, gnl|fr1|chrUn (296853649-296853843)
               

               
               653-834, gnl|hg17|chr6 (30623104-30623317)
               

               
               653-834, gnl|Hg17|chr6 (30623106-30623287)
               

               
               653-834, gnl|mm7|chr17 (34091691-34091490)
               

               
               653-834, gnl|Mm7|chr17 (34091687-34091506)
               

               
               653-834, gnl|monDom2|scaffold_42 (18746514-18746272)
               

               
               653-834, gnl|panTro1|chr5 (31075199-31075412)
               

               
               653-834, gnl|rheMac2|chr4 (30127837-30128050)
               

               
               653-834, gnl|rn3|chr20 (2933227-2933438)
               

               
               653-834, gnl|tetNig1|chr8 (9209596-9209383)
               

               
               653-834, gnl|xenTro1|scaffold_547 (680513-680703)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	653-834, gnl\|bosTau2\|chr23 (20929257-20929076)
	653-834, gnl\|canFam2\|chr12 (3376563-3376775)
	653-834, gnl\|danRer3\|chr16 (21806621-21806839)
	653-834, gnl\|echTel1\|scaffold_176674 (12753-12955)
	653-834, gnl\|fr1\|chrUn (296853649-296853843)
	653-834, gnl\|hg17\|chr6 (30623104-30623317)
	653-834, gnl\|Hg17\|chr6 (30623106-30623287)
	653-834, gnl\|mm7\|chr17 (34091691-34091490)
	653-834, gnl\|Mm7\|chr17 (34091687-34091506)
	653-834, gnl\|monDom2\|scaffold_42 (18746514-18746272)
	653-834, gnl\|panTro1\|chr5 (31075199-31075412)
	653-834, gnl\|rheMac2\|chr4 (30127837-30128050)
	653-834, gnl\|rn3\|chr20 (2933227-2933438)
	653-834, gnl\|tetNig1\|chr8 (9209596-9209383)
	653-834, gnl\|xenTro1\|scaffold_547 (680513-680703)