Non-Coding RNA Search

Ss1.1-recc2805c_n22.5

Sequence:


               
               TTTTAAAATATGAGTGCCTTGGATCTATTTAAAACCACGTTGATGGTTCTTTCTACTTGT
TGTAAACTTGTAGCTTAATTCAGCATTGGGTGAGGTAATAAACCTTAGGACCTAGCGTAT
AATTCTATATTGTTTTTCTCACAACAATGGCTACCTAAAAATATGACCCATTATGTCCTA
GTTAATCATCATTTTTCCTTTCGTTTAATCCTGTAAGCAAAACTGATTATACCAGTATAA
AAGCTATTTTGCTCCTGGTGAGAGCTTAAAAGAAATGGGCTGTTTTGCCCAAAGTTTTAT
TTTTTTTAAATGATGATTAAATTGAATGTGGAACGTGCAAAAGCCCTGGAACACGATTAA
ATACATTAGTAAGGGATTATTTTATGAAGATAACTTGTTTTAAATAATGTCTTTTGAGAA
AGATTCTGGCACCAGAAAAAATAGATCCAGATCGACTTGGTTGTCAAATGGACAATCAAA
TGATAAACTCTAAGACCTCGTCTAGCATATTAAAAAGAAGAGACTGACTATAAGGTTTGA
CAGAGGGTAACAGAGGGAAAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAAAATATGAGTGCCTTGGATCTATTTAAAACCACGTTGATGGTTCTTTCTACTTGT
TGTAAACTTGTAGCTTAATTCAGCATTGGGTGAGGTAATAAACCTTAGGACCTAGCGTAT
AATTCTATATTGTTTTTCTCACAACAATGGCTACCTAAAAATATGACCCATTATGTCCTA
GTTAATCATCATTTTTCCTTTCGTTTAATCCTGTAAGCAAAACTGATTATACCAGTATAA
AAGCTATTTTGCTCCTGGTGAGAGCTTAAAAGAAATGGGCTGTTTTGCCCAAAGTTTTAT
TTTTTTTAAATGATGATTAAATTGAATGTGGAACGTGCAAAAGCCCTGGAACACGATTAA
ATACATTAGTAAGGGATTATTTTATGAAGATAACTTGTTTTAAATAATGTCTTTTGAGAA
AGATTCTGGCACCAGAAAAAATAGATCCAGATCGACTTGGTTGTCAAATGGACAATCAAA
TGATAAACTCTAAGACCTCGTCTAGCATATTAAAAAGAAGAGACTGACTATAAGGTTTGA
CAGAGGGTAACAGAGGGAAAAAAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-118, - strand, RNAz p=0.651459
               

               
               199-351, + strand, RNAz p=0.954679

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.651459
               

               
               199-351, + strand, RNAz p=0.954679

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AJ404611, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AJ404611, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-563, gnl|bosTau2|chr11 (29352679-29352118)
               

               
               1-563, gnl|Hg17|chr2 (60598479-60597924)
               

               
               1-563, gnl|Mm7|chr11 (24117887-24118439)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-563, gnl|bosTau2|chr11 (29352679-29352118)
               

               
               1-563, gnl|Hg17|chr2 (60598479-60597924)
               

               
               1-563, gnl|Mm7|chr11 (24117887-24118439)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sin (0.174948)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               ecc (0.115035)

	1-118, - strand, RNAz p=0.651459
	199-351, + strand, RNAz p=0.954679

	1-563, gnl\|bosTau2\|chr11 (29352679-29352118)
	1-563, gnl\|Hg17\|chr2 (60598479-60597924)
	1-563, gnl\|Mm7\|chr11 (24117887-24118439)