Non-Coding RNA Search

Ss1.1-recc2805c_n5.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTAATTAAATAAAGGCTAAACTAAATTTCTTCATGCAACCT
TTCCTAAAGGCCATGGCCAGTTTTCTACAGAAGCTATTTTTGACAACCTCAAGTGGCATT
ACCTTTTTGCAGTGAAGTAGAGGAAACCAGGGGGGCTTCACAAGTCTCATTTCTTGAGGG
TCTTCTGTTGGAAGCAGGAGAAGGAGGGAAAGTTGTCTCAAGTTCCCTCTGAATTGCCGG
CCTTGGGGTCGTGGGGACTGCTCTGGTTCTTTGAAGGCGTTGAGAACTTTTGTGCAGTAT
TGATTCTGAATTGAAAGCAGAAAATGGGAGTGAGTAGCAAGGCAGTGGTTTGTAGTTGGT
AACAAGTAATGCAAGTCAGATGTTTCCTACCTTGCTTTATACCACTAGAAACAGCCCATC
AGCAGACAATTGCTCTTTGTATTATACCAATCTTGAGTGGAAACATTTCTGTAAAATTGT
AACTTTCAAAAGAGTAAAAAGTGTCTTGGTTAGTAATGGTGTTGGAGAACATACAGTATT
GCATGTTTTTGTGTGTACTGATTGTGGTTCGAAGATTGGGAGGGCTCTGAGACAAGCGGA
GTACTAAATCAAAAGTTATTTAGGTATTTTTTTTGCCAATAAAAAGTAAAATAATTTGGT
GGAAACAGCTTGTGCTTTGAGGAGCCCAGTTTTATTCTGTTGTATGAAGCTAATTTCCAC
TTTGACAATTGTTCTTCTTTTGTTCATGGTATAAATGGATGGAATATAATAATACTCTAC
TTTGAGACAAAGCATTTCCTTAAAATGTTTGTTAGGTTAAGCTGTGCTGTTCTACTGATG
TTTAAGTTAATAATGAGAATTATAATTTTAAATGATGTTTCTTTGTTAGACACAGTGTCA
TCTTAAATTGAAAGACTAAATTCTGCAAGTACTGTATAATATTTTTTGGCTTATAATGCT
ACATTTTTATTAATGTATCTTCCGTTTTGAGGATTTATATCTGTATTTCTCTTTGCATTA
TATAAATATACCAGTATTTTCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTAATTAAATAAAGGCTAAACTAAATTTCTTCATGCAACCT
TTCCTAAAGGCCATGGCCAGTTTTCTACAGAAGCTATTTTTGACAACCTCAAGTGGCATT
ACCTTTTTGCAGTGAAGTAGAGGAAACCAGGGGGGCTTCACAAGTCTCATTTCTTGAGGG
TCTTCTGTTGGAAGCAGGAGAAGGAGGGAAAGTTGTCTCAAGTTCCCTCTGAATTGCCGG
CCTTGGGGTCGTGGGGACTGCTCTGGTTCTTTGAAGGCGTTGAGAACTTTTGTGCAGTAT
TGATTCTGAATTGAAAGCAGAAAATGGGAGTGAGTAGCAAGGCAGTGGTTTGTAGTTGGT
AACAAGTAATGCAAGTCAGATGTTTCCTACCTTGCTTTATACCACTAGAAACAGCCCATC
AGCAGACAATTGCTCTTTGTATTATACCAATCTTGAGTGGAAACATTTCTGTAAAATTGT
AACTTTCAAAAGAGTAAAAAGTGTCTTGGTTAGTAATGGTGTTGGAGAACATACAGTATT
GCATGTTTTTGTGTGTACTGATTGTGGTTCGAAGATTGGGAGGGCTCTGAGACAAGCGGA
GTACTAAATCAAAAGTTATTTAGGTATTTTTTTTGCCAATAAAAAGTAAAATAATTTGGT
GGAAACAGCTTGTGCTTTGAGGAGCCCAGTTTTATTCTGTTGTATGAAGCTAATTTCCAC
TTTGACAATTGTTCTTCTTTTGTTCATGGTATAAATGGATGGAATATAATAATACTCTAC
TTTGAGACAAAGCATTTCCTTAAAATGTTTGTTAGGTTAAGCTGTGCTGTTCTACTGATG
TTTAAGTTAATAATGAGAATTATAATTTTAAATGATGTTTCTTTGTTAGACACAGTGTCA
TCTTAAATTGAAAGACTAAATTCTGCAAGTACTGTATAATATTTTTTGGCTTATAATGCT
ACATTTTTATTAATGTATCTTCCGTTTTGAGGATTTATATCTGTATTTCTCTTTGCATTA
TATAAATATACCAGTATTTTCATT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               8-127, - strand, RNAz p=0.766795
               

               
               625-743, + strand, RNAz p=0.540067

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               8-127, - strand, RNAz p=0.766795
               

               
               625-743, + strand, RNAz p=0.540067

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-1044, gnl|bosTau2|chr22 (23928359-23927327)
               

               
               8-1044, gnl|Hg17|chr3 (71887312-71888332)
               

               
               8-1044, gnl|Mm7|chr6 (99782151-99783135)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1044, gnl|bosTau2|chr22 (23928359-23927327)
               

               
               8-1044, gnl|Hg17|chr3 (71887312-71888332)
               

               
               8-1044, gnl|Mm7|chr6 (99782151-99783135)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               fco (0.314416)
               

               
               ret (0.257467)
               

               
               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cli (0.152812)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cli (0.152812)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	8-127, - strand, RNAz p=0.766795
	625-743, + strand, RNAz p=0.540067

	8-1044, gnl\|bosTau2\|chr22 (23928359-23927327)
	8-1044, gnl\|Hg17\|chr3 (71887312-71888332)
	8-1044, gnl\|Mm7\|chr6 (99782151-99783135)

	fco (0.314416)
	ret (0.257467)
	ecc (0.23007)
	cbl (0.229595)
	duo (0.172801)
	eye (0.170503)
	cut (0.169924)
	cli (0.152812)
	lyg (0.133103)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	eep (0.122564)
	pgl (0.118483)
	eje (0.0988338)